Sus scrofa (pig): 100524299
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Entry
100524299 CDS
T01009
Symbol
LRP5
Name
(RefSeq) low-density lipoprotein receptor-related protein 5 isoform X1
KO
K03068
low density lipoprotein receptor-related protein 5/6
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04150
mTOR signaling pathway
ssc04310
Wnt signaling pathway
ssc04928
Parathyroid hormone synthesis, secretion and action
ssc05010
Alzheimer disease
ssc05022
Pathways of neurodegeneration - multiple diseases
ssc05200
Pathways in cancer
ssc05224
Breast cancer
ssc05225
Hepatocellular carcinoma
ssc05226
Gastric cancer
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
100524299 (LRP5)
04150 mTOR signaling pathway
100524299 (LRP5)
09150 Organismal Systems
09152 Endocrine system
04928 Parathyroid hormone synthesis, secretion and action
100524299 (LRP5)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100524299 (LRP5)
09162 Cancer: specific types
05225 Hepatocellular carcinoma
100524299 (LRP5)
05226 Gastric cancer
100524299 (LRP5)
05224 Breast cancer
100524299 (LRP5)
09164 Neurodegenerative disease
05010 Alzheimer disease
100524299 (LRP5)
05022 Pathways of neurodegeneration - multiple diseases
100524299 (LRP5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssc04131
]
100524299 (LRP5)
Membrane trafficking [BR:
ssc04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
100524299 (LRP5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
FXa_inhibition
Ldl_recept_a
Vgb_lyase
DUF5050
EGF_LRP2
SGL
Insulin_TMD
EGF
Motif
Other DBs
NCBI-GeneID:
100524299
NCBI-ProteinID:
XP_020938378
Ensembl:
ENSSSCG00000012885
LinkDB
All DBs
Position
2:complement(4533721..4653997)
Genome browser
AA seq
1624 aa
AA seq
DB search
MEAAPPRPPPPPPPLLLLLALCCSLAPAAASPLLLFANRRDVRLVDAGGVKLESTIVVSG
LEDAAAVDFQFSKGAVYWTDVSEEAIKQTYLNQTGAAVQNVVISGLVSPDGLACDWVGKK
LYWTDSETNRIEVANLNGTSRKVLFWQDLDQPRAIALDPAHGYMYWTDWGETPRIERAGM
DGSSRKVIVDSDIYWPNGLTIDLEEQKLYWADAKLSFIHRANLDGSFRQKVVEGSLTHPF
ALTLSGDTLYWTDWQTRSIHACNKRTGEKRKEILSALYSPMDIQVLSPERQPYFHTRCEE
DNGGCSHLCLLSPREPYYACACPTGVQLQGNGQTCKAGAEEVLLLARRTDLRRISLDTPD
FTDIVLQVDDIRHAIAIDYDPLEGYVYWTDDEVRAIRRAYLDGSGAQTLVNTEINDPDGI
AVDWVARNLYWTDTGTDRIEVTRLNGTSRKILVSEDLDEPRAIVLHPVMGLMYWTDWGES
PKIECAHLDGQERHVLVNTSLGWPNGLALDLQEGQLYWGDAKTDKIEVINIDGTERRTLL
EDKLPHIFGFTLLGDFIYWTDWQRRSIERVHKVKASRDIIIDQLPDLMGLKAVNVAKVVG
TNPCADRNGGCSHLCFFTPRATKCGCPIGLELLSDMKTCIVPEAFLVFTSRAAIHRISLD
TNNNDVAIPLAGVKEASALDFDVSTNHIYWTDVSLKTISRAFMNGSSVEHVIEFGLDYPE
GMAVDWMGKNLYWADTGTNRIEVARLDGQFRQVLVWRDLDNPRSLALDPTKGYIYWTEWG
GKPRIVRAFMDGTNGMTLVDKVGRANDLTIDYADQRLYWTDLDTNMIESSNMLGQERVVI
ADDLPHPFGLTQYSDYIYWTDWNLHSIERADKTSGRNRTLIQGHLDFVMDILVFHSSRQD
GLNDCMHNNGQCGQLCLAVPSGHRCSCASHYTLDPSSRNCSPPTTFLLFSQKCAVSRMIP
DDQHSPDLILPLHGLRNVRAIDYDPLDKFIYWVDGRQNIKRAKDDGTQPFVLTSPGQSQS
PDRQPHDLSIDVYGRTLFWTCEATNTINVHRLNGDAMGVVLRGDRDKPRAIVVNAERGYL
YFTNMQDRAAKIERAALDGTEREVLFTTGLIRPVALVVDNALGKLFWVDADLKRIESCDL
SGANRLTLEDANIVQPVGLTVLGKHLYWIDRQQQMIERVDKTTGDSRTRVQGRVAHLTGI
HAVEDISVEEFSAHPCARDNGGCSHICIAKGDGTPRCSCPVHLVLLQNLLTCGEPPTCSP
DQFACATGEIDCIPGAWRCDGFPECDDQSDEEGCPVCSAAQFPCARGQCVDLRLRCDGEA
DCQDRSDEADCDASLNARPLLAAVCLPNQFRCASGQCVLIKQQCDSFPDCIDGSDELMCE
ITKLPSDDSPAHSSAIGPVIGIILSLFVMGGVYFVCQRVVCQRYAGATGPFPHEYVSGTP
HVPLNFIAPGGSQHGPFPGISCSKSMMSSVSLMGGRAGVPLYDRNHVTGASSSSSSSTKA
TLYPPILNPPPSPATDPSLYNLDVFYSSNIPAAARPYRPYIIRGMAPPTTPCSTDVCDSD
YSASRWKASKYYLDLNSDSDPYPPPPTPHSQYLSAEDSCPPSPATERSYFHLFPPPPSPC
TDSS
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggcgccgccccggccgcccccgccgccgccgccgctgctgctgctgctcgcg
ctctgctgcagcttggcccccgccgcggcctcgccgctcctgctgtttgccaaccgccgg
gatgtgcggctggtggacgccggcggagtcaagctggagtccaccatcgtggtcagcggc
ctggaggacgcggccgcggtggacttccagttctccaagggggccgtgtactggacggac
gtgagtgaggaggccatcaagcagacctacctgaaccagacgggggcggccgtgcagaac
gtggtcatctccggcctggtgtcgcccgacggcctggcctgcgactgggtcggcaagaag
ctgtactggacggactcggagaccaatcgcatcgaggtggccaatctcaacgggacgtcg
cggaaggtcctcttctggcaggacctcgaccagccgcgggccatcgccttggaccctgct
cacgggtacatgtactggacagactggggtgagacaccccggatcgagcgggcggggatg
gacggcagcagccggaaggtcatcgtggactcggacatctactggcccaatgggctgacc
atcgacctggaggagcagaagctgtactgggccgacgccaagctcagcttcatccaccgg
gccaacctggacggctcgttccggcagaaggtggtggagggcagcctgacgcaccccttt
gccctgacgctctctggagacactctgtactggacggactggcagacccgctccatccac
gcctgtaacaagaggactggggagaagaggaaggagattctgagcgccctctactcgccc
atggacattcaggtcctcagccccgagcggcagccttacttccacacccggtgtgaggag
gacaacggcggctgctcccacctgtgcctgctgtccccgagggagccttactacgcgtgc
gcctgccccactggcgtgcagctgcagggcaacggccagacgtgcaaggcaggggccgag
gaggtgctgctgctggcccggaggacggacctgcggaggatctcgctggacacgccggac
ttcacggacatcgtgctgcaggtggacgacatccggcacgccatcgccatcgactacgac
ccgctggagggctacgtgtactggacggacgacgaggtgcgggccatccgcagggcgtac
ctggacgggtcgggggcgcagacgctggtcaacaccgagatcaacgacccggacggcatc
gcggtcgactgggtggcccgcaacctctactggacggacacgggcaccgaccgcatcgag
gtgacgcgcctcaacggcacctcccgcaagatcctggtgtccgaggacctggacgagccc
cgcgccatcgtgctgcaccccgtgatgggcctcatgtattggacagactggggggagagc
cccaaaattgagtgcgcccacctggacgggcaggagcggcacgtcctggtcaacacctcc
ctcggctggcccaacggactggctctggacctgcaggaggggcagctctactggggagac
gccaagacagacaagatagaggtgatcaacatcgacgggacggagaggcggacgctcctg
gaggacaagctcccgcacattttcgggttcacgctgctgggggacttcatctactggacc
gactggcagcggcgcagcatcgagcgcgtgcacaaggtcaaggccagccgggacatcatc
atcgaccagctgcctgacctgatggggctcaaggccgtgaacgtggccaaggtcgtcggg
accaacccgtgcgcggacaggaacgggggctgcagtcacctgtgcttcttcacgccgcgc
gccaccaagtgcggctgccccatcggcctggagctgctgagtgacatgaagacctgcatc
gtgcccgaggccttcctcgtgttcaccagcagggccgccatccaccggatctccctggac
accaacaacaacgacgtggccatcccgctcgcgggcgtcaaggaggcctccgcgctggac
ttcgacgtgtccactaaccacatctactggaccgacgtcagcctgaagaccatcagccga
gccttcatgaacgggagctccgtggagcacgtgatcgagtttggccttgactacccggaa
ggcatggccgtcgactggatgggcaagaacctctactgggcagacaccgggaccaacagg
atcgaagtggcccggctggacgggcagttccggcaggtcctcgtctggcgggacctggac
aacccgaggtccctggccctagaccccaccaaaggctacatctactggaccgagtggggc
ggcaagcccaggatcgtgcgggccttcatggacggcaccaacggcatgacgctggtggac
aaggtgggccgggccaacgacctcaccattgactacgccgaccagcgtctctactggacg
gacctggacaccaacatgattgagtcgtccaacatgctgggtcaggagagggtggtgatt
gccgacgacctcccgcaccccttcggcctgacccagtacagcgattacatctactggaca
gactggaacctgcacagcatcgagcgggccgacaagaccagtggccggaaccgcaccctg
atccagggccacctggacttcgtgatggacatcctggtgttccactcctcccgccaggac
ggcctcaacgactgcatgcacaacaacgggcagtgcgggcagctgtgcctggccgtcccc
agcggccaccgctgcagctgcgcctcacactacaccctggaccccagcagccgcaactgc
agcccgcccaccaccttcttgctgttcagccagaaatgcgccgtcagccggatgatcccc
gacgaccagcacagcccggacctcatcctgcccctgcacgggctgaggaacgtcagggcc
attgactacgacccactggacaagttcatctactgggtagatgggcgccagaacatcaaa
cgggccaaggacgacgggacccagcccttcgttctgacctctccgggccaaagccagagc
ccagacaggcagccccacgacctcagcatcgacgtctacggccggacactgttctggacg
tgcgaggccaccaacaccatcaacgtccaccggctgaacggggacgccatgggcgtggtg
ctccggggggaccgagacaagccgagggccatcgtcgtcaacgccgagcgagggtacctg
tacttcaccaacatgcaggaccgggcggccaagatcgagcgtgccgccctggatggcacc
gagcgtgaggtcctcttcaccacgggcctcatccgccccgtggccctcgtggtggacaac
gcgctgggcaagctcttttgggtggacgcagacctgaaacgcatcgagagctgcgacctg
tcaggggccaaccgcctgaccctggaggacgccaacatcgtgcagcccgtgggcctgact
gtgctgggcaagcacctctactggattgaccgccagcagcagatgatcgagcgcgtggac
aagaccacgggggactcgcggacacgggtgcagggccgtgtcgcccacctgaccggcatt
cacgccgtggaggacatcagcgtggaggagttctcagcccacccttgtgcccgggacaat
ggcggctgttcccacatctgcatcgccaagggtgatggaaccccacggtgctcatgccca
gtccaccttgtgctcctgcagaacctattgacttgtggtgagcctcccacatgctccccc
gaccagttcgcgtgtgccacaggggagatcgactgcatcccaggggcctggcgctgcgac
ggcttcccggagtgtgacgaccagagcgacgaagagggctgcccggtgtgctcggccgcc
cagttcccctgtgcgcggggccagtgcgtggacctgcggctgcgctgtgatggcgaggcg
gactgccaggaccgctccgacgaggcggactgcgatgcctccctgaacgcaaggcccctc
cttgcagccgtctgcctgcccaaccagttccggtgcgccagcggccagtgcgtcctcatc
aagcagcagtgcgactcctttcctgactgcatcgacggctccgacgagctcatgtgcgaa
atcaccaagctgccctcggacgacagcccggcccacagcagcgccatcgggcctgtcatc
ggcatcatcctgtcgctcttcgtcatgggcggggtctacttcgtgtgccagcgcgtggtg
tgtcagcgctacgcgggggccaccgggcccttcccgcacgagtacgtcagtgggaccccc
cacgtgcccctcaacttcatcgcgccgggcggctcccagcacgggcccttcccaggcatc
tcctgcagcaagtccatgatgagctccgtgagcctgatggggggccgggccggggtgccc
ctctacgaccggaaccacgtcaccggggcctcgtccagcagctcatccagcaccaaggcc
acgctgtacccgccgatcctgaacccgccaccatcccccgccacggacccctccctctac
aacctggacgtgttctactcctccaacattccggccgccgccaggccctacaggccctac
atcatccgcggcatggcgcccccgacgacgccctgcagtacagacgtgtgcgacagcgac
tacagcgccagccgctggaaggccagcaagtactacctggatttgaactcggactcagac
ccctacccacccccgcccacgccgcacagccagtacctgtcggcggaggacagctgcccg
ccttcgccagccacggagaggagttacttccacctcttcccgcccccaccgtccccctgc
acggactcgtcctga
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integrated database retrieval system
