Sus scrofa (pig): 100524405
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Entry
100524405 CDS
T01009
Symbol
ERCC8
Name
(RefSeq) DNA excision repair protein ERCC-8 isoform X1
KO
K10570
DNA excision repair protein ERCC-8
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03420
Nucleotide excision repair
ssc04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
100524405 (ERCC8)
09124 Replication and repair
03420 Nucleotide excision repair
100524405 (ERCC8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ssc04121
]
100524405 (ERCC8)
03400 DNA repair and recombination proteins [BR:
ssc03400
]
100524405 (ERCC8)
Ubiquitin system [BR:
ssc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
100524405 (ERCC8)
DNA repair and recombination proteins [BR:
ssc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
100524405 (ERCC8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
EIF3I
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
ANAPC4_WD40
WD_LRWD1
Beta-prop_TEP1_C
WD40_RFWD3
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_RIG_1st
Beta-prop_Nup120_160
Beta-prop_NUP159_NUP214
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
100524405
NCBI-ProteinID:
XP_003134037
Ensembl:
ENSSSCG00000016934
UniProt:
A0A4X1USQ4
A0A8D1KG50
LinkDB
All DBs
Position
16:complement(39704602..39770330)
Genome browser
AA seq
396 aa
AA seq
DB search
MLGFLSARQAGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGSGVNTLDIEPVEGRYML
SGGSDGVIVLYDLENASRQPYYTCKAVCSVGRNHPDVHKYSVETVQWYPHDTGMFTSSSF
DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVATKHCLVAVGTKGPKVQLCDLKSGSCSH
ILQGHRQEILAVSWSPRYEYILATASADSKAKLWDVRRASGCLITLDQHNGKKSQAVESA
NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVHNDSRKGLKFTVS
CGCSTEFVFVPYGSTIAVYTIYSGEQITMLKGHYKSVDCCVFQSNFQELYSGSRDCNILA
WVPSLYESVPDNDEATTKSQLNPAFEDAWSSSDEEG
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgctagggtttttgtcggcgcgacaagcgggtttggaggaccctcttcgcctacggaga
gcggagtccacacggagagttttgggactggagttaaacaaggacagagatgttgaaagg
atccatggcagtggagttaacacccttgacattgaacctgttgaagggagatacatgtta
tcaggtggttcagatggtgtgattgtgctttatgatcttgagaacgccagcagacaacct
tattacacatgtaaagcagtgtgttccgttggcagaaaccaccctgatgttcacaaatac
agtgtggagactgtacagtggtatcctcatgacactggcatgttcacatcaagttcattt
gataaaactctgaaagtatgggatacaaataccttacaaactgcagatgtatttaatttt
gaagaaacagtttatagtcatcatatgtctccagttgccaccaagcactgtttggtagca
gttggtactaaagggcccaaagtacaactttgtgacttaaagtctggatcctgttcccac
attctccagggtcacagacaagaaatattggcagtctcctggtcaccacgctatgaatat
atcttggcaactgcaagtgctgacagtaaagcaaaattatgggatgtgagaagagcatca
ggatgtttgattacgcttgatcagcataatgggaaaaagtcacaagcagttgaatcagca
aacactgctcataatgggaaggttaatggcttatgttttacaagcgatgggcttcacctc
ctcactgttggtacagataatcgaatgaggctctggaatagttccaatggagaaaacaca
ctagtgaactatggaaaagttcataatgacagtagaaaaggattgaaattcactgtctcc
tgtggctgcagtacagaatttgtttttgtaccatatggtagcaccattgctgtttataca
atttactcaggagaacagataactatgcttaagggacattataaaagtgttgactgctgt
gtatttcagtctaatttccaggaactttatagcggtagcagagactgcaatattcttgct
tgggtaccatccttatatgaatcagttcctgataatgatgaggctacaaccaaatcacag
ttaaatccagcatttgaagatgcctggagcagcagtgatgaggaaggatga
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