Sus scrofa (pig): 100525150
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Entry
100525150 CDS
T01009
Symbol
CD44
Name
(RefSeq) CD44 antigen isoform X9
KO
K06256
CD44 antigen
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04512
ECM-receptor interaction
ssc04640
Hematopoietic cell lineage
ssc05169
Epstein-Barr virus infection
ssc05205
Proteoglycans in cancer
ssc05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100525150 (CD44)
09150 Organismal Systems
09151 Immune system
04640 Hematopoietic cell lineage
100525150 (CD44)
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
100525150 (CD44)
05205 Proteoglycans in cancer
100525150 (CD44)
09172 Infectious disease: viral
05169 Epstein-Barr virus infection
100525150 (CD44)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssc04147
]
100525150 (CD44)
04090 CD molecules [BR:
ssc04090
]
100525150 (CD44)
00535 Proteoglycans [BR:
ssc00535
]
100525150 (CD44)
00536 Glycosaminoglycan binding proteins [BR:
ssc00536
]
100525150 (CD44)
Exosome [BR:
ssc04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
100525150 (CD44)
Exosomal proteins of other body fluids (saliva and urine)
100525150 (CD44)
Exosomal proteins of colorectal cancer cells
100525150 (CD44)
Exosomal proteins of bladder cancer cells
100525150 (CD44)
CD molecules [BR:
ssc04090
]
Proteins
100525150 (CD44)
Proteoglycans [BR:
ssc00535
]
Cell surface proteoglycans
Others
100525150 (CD44)
Glycosaminoglycan binding proteins [BR:
ssc00536
]
Hyaluronan
Cell surface receptors
100525150 (CD44)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
DUF4138
Motif
Other DBs
NCBI-GeneID:
100525150
NCBI-ProteinID:
XP_003480758
Ensembl:
ENSSSCG00000013297
Vega:
OTTSUSG00000001451
LinkDB
All DBs
Position
2:complement(25788699..25884209)
Genome browser
AA seq
374 aa
AA seq
DB search
MSPAHSLRRSDAMDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTE
AADLCKAFNSTLPTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILA
SNTSQYDTYCFNASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDI
NPNMAPEDDMSSGSSSERSTSGGYSIFHTHLPTTTHPDQEGPWVSSNPEDTPATKDQDPY
FDPSGRSFTTHGSESAGHSSGSQEGEANTTSGPIRKSQIPEWLIILASLLALALILAVCI
AVNSRRRCGQKKKLVINNGNGPVEERKPSGLNGEASKSQEMVHLVNKESTETPDQFMTAD
ETRNLQNVDMKIGV
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgtcacccgctcactctctccgtcgttccgacgccatggacaccttttggtggcgcgca
gcttggggactctgcctcgtgcagctgagcctggcgcagatcgatctgaatataacctgc
cgatacgcaggtgtattccatgtggagaagaatggtcgctacagcatctcgaagactgag
gccgctgacctctgcaaagccttcaacagcacgctgcccaccatggcccagatggaggcg
gccctgaacatagggtttgagacttgcaggtatgggttcatcgatgggcacgtggtgatc
ccccggatccaccccaatgccatctgtgctgcgaacaacacaggggtgtacatcctcgca
tccaatacctcccagtatgacacgtattgcttcaatgcatcagctccacctgaagaagat
tgtacatcagtcacagacctgcctaataccttcgaaggaccaattaccataactattgtt
aaccgcgatggcacccgctacaccaagaaaggtgaatacaggaccaaccccgaggacatc
aaccccaacatggctccggaggatgatatgagcagtggatcatccagtgaaagaagcact
tccgggggttacagcatcttccacacccaccttccgactactacgcacccagaccaagaa
ggtccttgggtctctagcaacccggaggataccccagctaccaaagaccaagacccctac
tttgaccccagcgggaggtcctttactactcacggatctgaatcagctggccactcaagt
gggagtcaagaaggtgaggcaaacacaacctctggtcctatacggaaatctcaaattcca
gaatggctgatcatcctggcgtcccttctggccctggccttgattcttgcagtttgcatt
gccgtcaacagtcggaggaggtgtgggcagaagaaaaagctggtgattaacaatggcaat
ggacctgtggaagagagaaagccaagcggactcaatggagaagccagcaagtctcaggag
atggtgcatttggtgaacaaggagtcgacagagaccccagaccagtttatgacggcggac
gagacacggaacctgcagaatgtggacatgaagattggggtgtaa
DBGET
integrated database retrieval system
