Sus scrofa (pig): 100525328
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Entry
100525328 CDS
T01009
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100525328 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100525328 (XAB2)
03041 Spliceosome [BR:
ssc03041
]
100525328 (XAB2)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100525328 (XAB2)
Spliceosome [BR:
ssc03041
]
Complex B
Other components
Prp19-related factors
100525328 (XAB2)
Complex C
100525328 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
ARM_TT21
TPR_15
ARM_TT21_C
TPR_1
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
100525328
NCBI-ProteinID:
XP_003123199
Ensembl:
ENSSSCG00000013582
UniProt:
A0A8D0XFD8
A0A8D1A975
F1SCH5
LinkDB
All DBs
Position
2:71521034..71530468
Genome browser
AA seq
855 aa
AA seq
DB search
MVVMARLSRTERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPSQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPSRAQSKILFVRSDASREELAELAQRANPEEIELGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcggctctcgagaaccgagcggccggacctcgtctttgaggaagag
gacctcccttatgaggaggagatcatgcggaaccagttctccgtcaaatgctggctccgc
tacattgagttcaaacagggtgccccgaagcccagactcaatcagctgtacgagcgggcg
ctgaagctgctgccctgcagctacaaactctggtaccgctacctgaaggcacgccgggca
caggtgaagcaccgttgcgtgaccgacccagcctatgaagatgtcaacaactgccatgag
agggcctttgtattcatgcacaagatgccacggctgtggctagattattgccaattccta
atggaccagggacgtgtcacacacacacgccgcacttttgaccgcgcgctccgggcattg
cccatcacacagcactctcgtatttggcccctgtacctgcgcttcctgcgctcacacccc
ctgcctgagacagctgtgcggggctaccgacgcttcctcaagctaagccccgagagtgcc
gaggagtacatcgagtacctcaagtcaagtgaccggctggatgaggctgcacagcgcctg
gccaccgtggtgaatgacgagcgcttcgtgtccaaggccggcaagtccaactaccagctg
tggcacgagctctgcgacctcatctcccagaacccagacaaggtgcagtctctcaacgtg
gacgccatcatccgcgggggcctcacccgctttaccgaccagctgggcaagctgtggtgc
tcgctggccgactactacatccgcagcggtcactttgagaaggctcgggatgtgtatgag
gaggccatccggactgtgatgaccgtgcgggacttcacgcaggtgtttgacagctatgcc
cagttcgaggagagcatgattgcagcaaagatggagacggcttcggagctggggcgggag
gaggaggacgacgtggacctagagctgcgcctggcccgcttcgagcagctcatcagccgg
cggcccctgctcctcaacagcgtcctgctccgccaaaacccgcaccacgtacatgagtgg
cacaagcgtgtggccctgcaccagggccgcccccgggagatcatcaacacatacactgag
gctgtgcagacggtggaccccttcaaggccaccggcaagccccacacgctgtgggtcgca
ttcgccaagttttatgaggacaacgggcagctggacgacgcccgcgtcatcctggagaaa
gccaccaaggtgagcttcaagcaggtggacgacctggccagcgtgtggtgtgagtgtggt
gaactggagctccggcatgagaactatgaccaggctctgcggctgctgcggaaggcgacc
gcgctgcctgcccgccgggccgagtactttgatggctcagagcccgtgcagaaccgagtg
tacaagtctctgaaggtgtggtcgatgttggccgacctggaggaaagcctcggcaccttc
cagtccaccaaagctgtgtacgaccgcatcctggacctgcgcatcgccacgcctcagatc
gtcatcaactacgccatgtttctggaggagcacaagtactttgaggagagcttcaaggca
tatgagcgcggcatctcgctgttcaagtggcccaacgtgtctgacatctggagcacctac
ctgaccaagttcattgcccgctatgggggccgaaagctagagcgggcacgggacctcttt
gagcaggcgctggatggctgccctcccaaatatgcaaagacgctgtacttgctgtacgcg
cagctggaggaggagtggggcctggccaggcacgccatggccgtgtacgagcgggccacc
cgggctgtggagccctcccagcaatacgacatgttcaacatctatatcaagcgggcagct
gagatctacggggtcacccacacccggggcatctaccagaaggccattgaggtgctgtcg
gatgagcacgcccgggagatgtgcctgcggttcgccgatatggagtgtaagcttggggag
atcgaccgcgcccgggccatctacagcttctgctcacagatctgcgacccccggactacc
ggggcgttctggcagacatggaaggacttcgaggtccggcacggcaacgaggacaccatc
cgggagatgcttcgcatccgccgtagcgtacaggccacctacaacacgcaggtcaacttc
atggcctcccagatgctcaaggtgtcaggcagcgccacgggcaccgtgtccgaccttgcc
cctgggcagagtggcatggatgacatgaagctgttagagcagcgggcggagcagctggca
gctgaggccgagcgggaccagccttcacgggcccagagcaagatcctgtttgtgaggagc
gacgcctctcgagaggagctggccgagctggcgcagcgggccaacccagaggagattgag
ctgggcgaggacgaggacgaggacgagatggacctggagcccaatgaggtgcggctggag
cagcagagcgtgccggctgccgtgtttgggagcctgaaggaagactga
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