Sus scrofa (pig): 100525390
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Entry
100525390 CDS
T01009
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssc03021
]
100525390 (CHD1)
03036 Chromosome and associated proteins [BR:
ssc03036
]
100525390 (CHD1)
Transcription machinery [BR:
ssc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
100525390 (CHD1)
Chromosome and associated proteins [BR:
ssc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
100525390 (CHD1)
SLIK complex
100525390 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Chromo
Helicase_C
DEAD
Motif
Other DBs
NCBI-GeneID:
100525390
NCBI-ProteinID:
XP_020941056
Ensembl:
ENSSSCG00000014177
LinkDB
All DBs
Position
2:complement(105113149..105205303)
Genome browser
AA seq
1794 aa
AA seq
DB search
MNGHSDEESVRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGS
QSESESDNSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQHQASSNSGSEE
DSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEEREKSSCDETESDYEP
KNKSRKPQNRSKSKNGKKIIGQKKRQIDSSEEEEEDEDYDNDKRSSRRQATVNVSYKEDE
EMKTDSDDLLEVCGEDVPQPEEEEFETIERFMDCRIGRKGATGATTTIYAVEADGDPNAG
FEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKRWLKNA
SPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDG
ALISKKFQACIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHEGLELRDYQL
NGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQ
REIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKAFLGGL
NWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFS
SWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYY
KWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRS
SGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQA
LDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQ
VNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELS
AILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVANFSN
MDEDDIELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYMLPRMRNCAKQISFNGSE
GRRSRNRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLE
RLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDNSSGTERTGGRLGKVKGPTFRISG
VQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIY
EYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLSKDLARKEAQRLS
GAGGSKRRKARAKKNKAMKSIKVKEEIKSDSSPLPSEKSDEDDDKDEITSVKHPNKKIKT
EGDSEEKPEPDVCIKKEPEEKREAKEKENKRELKREIKEKEDKKDIKEKDFKEKRENKVK
EAIQKEKDIKEEKLNESKSESKERSKKSSLSDAPVHITASGEPVPISEESEELDQKTFSI
CKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTNPEQIKQWRK
NLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQNNDQNSNLNTQVIRNPDVERLKDNTNH
DDSSRDSYSSDRHLSQYHDHHKDRHQGDSYKKSDSRKRPYSSFSNGKDHRDWDHYKQDSR
YYSDREKHRKLDDHRSRDHRSSLEGSLKDRTHSDHRSHSDHRLHSDHRSSSEYTHHKSSR
DYRYHSDWQMDHRASSSGPRSPLDQRSPYGSRSPFEHSIEHKNTPEHTWSSRKT
NT seq
5385 nt
NT seq
+upstream
nt +downstream
nt
atgaatggacacagtgatgaagaaagtgttagaaacagtagtggagaatcaagccagtca
gatgatgattctgggtcagcttcaggttctggatctggttcgagttctggaagcagcagt
gatggaagcagtagccagtcaggtagcagtgactctgactctggatctgaatcgggcagt
cagtcagagtctgagtcggacaattcccgagaaaataaagttcaagcaaaaccaccaaaa
gttgatggagctgagttctggaaatctagccctagtattctggctgttcagaggtctgca
atgctcaagaagcagcagcagcagcagcatcaagcttcatctaatagtggatcagaagag
gattcctccagcagtgaagattctgatgactcatcaagtgaggtcaaaaggaaaaagcat
aaagatgaagattggcagatgtctgggtcgggatctccatctcagtctggttcagattcg
gaatctgaagaagaaagagagaaaagtagttgtgatgaaacagaatctgactatgagcca
aaaaacaaaagtagaaaacctcagaatagatcaaagtcaaaaaatggaaaaaagattatt
ggacaaaaaaagaggcagattgattcatctgaggaggaggaggaggatgaagattatgat
aatgataaaagaagttctcgtcgccaagcaactgtcaatgttagttataaggaagatgaa
gaaatgaaaacagattctgatgacctattagaagtctgtggagaggatgttcctcaacct
gaggaagaggaatttgaaacaatagaacggtttatggattgtcggattgggagaaaagga
gctactggtgctactacaaccatctatgcagttgaagcagacggtgacccgaatgcagga
tttgaaaaaaacaaggaaccaggagagatccagtatttaattaaatggaaaggatggtca
catatccacaatacttgggagacagaagaaaccctaaagcaacagaatgttagaggaatg
aaaaaattagataattataagaaaaaagatcaggaaacaaaaagatggttgaaaaatgct
tctccagaagatgtggaatattacaattgccagcaagaacttacagatgatctccacaag
cagtatcaaatagtggagcgaataattgctcattccaatcaaaagtcagctgctggctat
cctgattattactgcaaatggcagggccttccatactcagaatgcagctgggaagatgga
gctctcatttcaaaaaagttccaagcatgcatagatgagtattttagcaggaatcaatca
aaaaccactccttttaaagattgcaaagtattaaaacaaaggccaagatttgtagcccta
aagaagcagccgtcctatattggaggacatgagggtttagaattaagagattatcaactg
aatggtttaaattggcttgctcattcttggtgcaaaggaaatagttgcatacttgctgat
gagatgggccttggaaaaacaatacagactatctcatttttaaattatttgtttcatgaa
caccaattatatggaccttttctattagtagtaccactctctactctcacttcctggcaa
agggagattcagacatgggcttctcaaatgaatgctgtggtttatttaggtgacatcaac
agcagaaacatgataagaactcatgaatggatgcatccccagactaaacggttaaaattt
aatatcctgttaacaacttatgaaatcttactgaaggataaggcattccttggaggtctg
aattgggcatttataggtgtagatgaagcacatcgattaaagaatgatgactctcttctg
tacaaaactttaatagattttaagtccaatcaccgtctccttatcactggaactcctcta
caaaactccctcaaagagctctggtctttgctacatttcattatgccagaaaagttttct
tcctgggaagattttgaagaagaacatggcaaaggcagagaatatggttatgcaagcctc
cacaaggagcttgagccgtttctgttacgcagggttaagaaagatgtggaaaaatctctt
cctgccaaggttgaacagattttaagaatggaaatgagtgctttacagaaacaatattac
aaatggatattaactaggaattacaaagccctcagcaaaggttccaagggcagtacctca
ggctttttgaatattatgatggagctaaagaaatgttgtaaccattgctacctcattaaa
ccaccagataataatgaattctataataaacaggaggccttacaacacttaatccgtagt
agcggaaaattaattcttcttgacaaactgttaattcgcctaagagagcgaggcaataga
gttcttattttttctcaaatggtgcggatgttagatatacttgcagaatatttgaaatat
cgtcagttcccctttcaacgattagatggatcaataaaaggggagctgaggaaacaagcc
ctagatcattttaatgctgaaggatcagaggatttctgctttttgctttccacaagagct
ggaggtttaggaattaacttagcctcagctgacactgttgttatatttgattctgattgg
aatccacagaatgatcttcaggcacaggctagagctcatcgaattgggcagaagaagcag
gtgaacatttatcgtctggttacaaagggatcagttgaagaggatattcttgaaagggcc
aaaaagaagatggttttagatcatcttgtgattcaaagaatggacaccactgggaagaca
gtactacacacaggttctgctccctcaagttctactcctttcaataaagaagagttatca
gccattttaaagtttggtgctgaggaactttttaaggagcctgaaggagaagaacaagag
ccccaggaaatggatatagatgaaattttgaagagggctgaaacccatgaaaatgaacca
ggccctttaaccgttggagacgaattactttctcagttcaaggttgccaacttttcaaat
atggatgaggatgacattgagttggaacctgaaagaaattcaaagaattgggaagaaatc
attcctgaagatcaaagaagacgattagaagaagaagaaagacaaaaggaacttgaagaa
atttatatgctcccaagaatgagaaattgtgcaaaacagattagcttcaatggaagtgaa
gggaggcgcagcagaaataggagatactctggatctgatagcgattcgatctcagaaagg
aaaaggccaaagaaacgtggaagaccacgaactatccctcgggaaaatattaaaggattt
agtgatgcagaaattcggcggtttatcaagagttataagaaatttggtggccctctggaa
agattagatgcaattgctcgagatgctgaattagttgataagtcagagacagatctcaga
cgactaggagaattggtacataatggttgcattaaagctttaaaggacaattcttcagga
acagaacgaacaggtggcagacttggaaaagttaagggtccaacattccgaatatcaggc
gtacaggtgaatgccaagctagtcatctcccatgaagaagaattaataccattgcacaaa
tccattccttcagatccagaagaaagaaaacagtacaccatcccatgccacacaaaggca
gctcattttgatatagactggggcaaagaagatgattccaatttgttaattggtatctac
gaatatggctatggaagctgggaaatgataaaaatggatcctgacctcagtctgacacac
aagattcttccagatgatcctgataaaaaaccacaagcaaaacagttacagacacgtgca
gactacctcatcaaattacttagtaaagatcttgcaagaaaagaagctcagagactttct
ggtgcaggaggttcaaagaggcgaaaagcaagagctaagaagaataaagcaatgaagtct
ataaaagtaaaagaggaaataaaaagtgattcttctcccttgccctcagaaaagtctgac
gaagatgatgataaggatgagatcacttctgtgaaacatccaaataaaaaaattaaaaca
gaaggagacagtgaagagaaacctgagccagatgtttgtataaagaaggaaccagaagaa
aagagggaagcaaaagaaaaggaaaataaaagagaacttaaaagggagataaaagaaaaa
gaggataagaaagatataaaggaaaaagattttaaagagaaaagagaaaacaaagtaaaa
gaagctatacaaaaagaaaaagacataaaggaagaaaagttgaacgaatctaaatctgag
agcaaggaaaggtctaagaaatcttcattgtcagatgctccagttcatatcactgcaagt
ggtgaaccggttcccatatctgaagaatctgaagagctggatcagaaaacattcagcatt
tgtaaagaaagaatgagacctgtcaaagcagctttgaagcaacttgataggcctgagaaa
ggcctttcagaaagagaacaactggaacatactagacagtgcttaataaaaattggagac
catatcactgaatgtctgaaagagtatacaaatcctgaacagatcaagcagtggaggaaa
aacctgtggatttttgtatcgaagtttactgagtttgatgcaagaaaattacataaatta
tataagcatgctattaaaaaacggcaggaatctcagcaaaataatgaccagaacagcaac
ttgaatactcaagtcattagaaatccagatgtggaaagattaaaagacaatacaaatcat
gatgatagcagcagggacagttattcatccgatcgacacttatctcagtatcatgatcac
cataaagaccgacatcagggagattcttataaaaagagtgactctaggaaaagaccctat
tcttcctttagtaatggtaaagatcatcgtgattgggatcactacaagcaagacagcaga
tattacagtgatagagagaaacacagaaaactggatgatcacaggagtagagaccacagg
tccagtttggaaggaagtttaaaagacagaactcattctgatcatcgttctcattcagat
catcggttacattcagaccatcggtcaagttctgaatatacacaccataaatcttccagg
gattataggtatcattcagattggcaaatggaccacagagcttccagtagtggccctaga
tcaccactagatcagaggtctccttatggctccagatctccctttgaacactcaattgaa
cacaaaaatacacctgagcatacctggagtagtcggaaaacataa
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integrated database retrieval system
