Sus scrofa (pig): 100525428
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Entry
100525428 CDS
T01009
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03030
DNA replication
ssc03420
Nucleotide excision repair
ssc03430
Mismatch repair
ssc03440
Homologous recombination
ssc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100525428 (RPA1)
03420 Nucleotide excision repair
100525428 (RPA1)
03430 Mismatch repair
100525428 (RPA1)
03440 Homologous recombination
100525428 (RPA1)
03460 Fanconi anemia pathway
100525428 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssc03000
]
100525428 (RPA1)
03032 DNA replication proteins [BR:
ssc03032
]
100525428 (RPA1)
03400 DNA repair and recombination proteins [BR:
ssc03400
]
100525428 (RPA1)
Transcription factors [BR:
ssc03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
100525428 (RPA1)
DNA replication proteins [BR:
ssc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
100525428 (RPA1)
DNA repair and recombination proteins [BR:
ssc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
100525428 (RPA1)
MMR (mismatch excision repair)
100525428 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
100525428 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Ubiquitin_At1g33420
IBR
Motif
Other DBs
NCBI-GeneID:
100525428
NCBI-ProteinID:
XP_003131870
Ensembl:
ENSSSCG00000017822
UniProt:
A0A480KQ60
LinkDB
All DBs
Position
12:48009652..48048744
Genome browser
AA seq
616 aa
AA seq
DB search
MVGHLSEGAIAAIMQQGDTSIKPILQVINIRPITTGNNPPRYRLLMSDGLNTLSSFMLAT
QLNPLVEEERLSSNCICQINRFIVNTLKDGRRVVILMDLEVLKSAEAVGVKIGNPVPYNE
GHGQQPVVPPPVSAASPPTSNPQQQNGSSGVGSTVSKAYGASKIFGKAGATSVVNSSGGT
QAKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEIRATAFNE
QVDKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFSNETSVMPCEDGHHLPTVQF
DFTGIADLENKSKDSLVDIIGICKNYEDVTKITVKSTNREVSKRNIYLMDMSGKVVNATL
WGEDADKFDGSRQPVMAIKGARVSDFGGRSLSILSSSTVIVNPDIPEAYKLRGWFDSEGQ
ALDGVSISDLKSGGIGGSNTNWKTLYEVKSENLGQGDKPDYFSAVATVVYLRKENCMYQA
CPTQDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAIL
GQSTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKGTVMDVKPVDYK
EYGRRLIMSIRKNAAM
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggtgggccacctgagcgagggggccattgcggccataatgcaacagggagatacatcc
ataaaacccatcctccaagtcattaacatccgtcccattaccacagggaacaatccaccc
cgttatcgactgcttatgagtgatggattgaatacgctgtcctctttcatgttggcgaca
cagctgaatcctcttgttgaggaagaacgattgtctagcaactgtatttgccagattaac
cgatttattgtgaacaccttgaaagatggaaggagagtagttattttaatggatttagaa
gttttgaaatcagccgaagcggttggagtaaagatcggcaatccagtgccttataacgaa
ggacacggacagcagccagttgttcctcctcccgtctcagcagccagcccaccaaccagc
aacccccagcaacagaacgggagctcgggagtgggttccactgtatctaaggcttatggt
gcctcaaagatatttggaaaagctggagctaccagtgtagtgaacagctctgggggaaca
caggccaaagtggtccccattgccagcctcaccccttaccagtccaagtggaccatttgt
gctcgtgttaccaacaaaagtcagatccgtacctggagcaattcccgaggggaagggaag
cttttctctatagaactagttgatgaaagcggcgaaatcagagccactgcgttcaacgag
caagtggacaagttctttccccttattgacgtgaacaaggtctattacttctctaaaggc
accctgaagattgccaacaaacaatttacggctgtcaaaaacgactacgagatgaccttc
agtaatgagacttctgtcatgccctgtgaggacggccatcatttacccacagttcagttt
gatttcacagggatcgccgacctggagaacaagtcgaaagactccctcgtagacataatt
gggatctgcaagaactacgaagatgtcaccaaaatcacagtgaagtctaccaaccgagaa
gtttccaagagaaatatctatttgatggacatgtcggggaaggtggtgaatgcgactctg
tggggagaagacgctgataaatttgatggttctaggcagcccgtgatggctatcaaagga
gccagagtctctgattttggtggacggagcctctccatactgtcttccagcacagtcatt
gtgaatcctgacatcccagaggcctataagcttcgtggatggtttgactcagaaggacaa
gccttagatggcgtttccatctctgatctgaagagtggaggcataggagggagcaacacc
aactggaaaactttatatgaggttaaatcggagaacctgggccaaggtgacaagcccgac
tatttcagtgctgtggccaccgtggtgtatcttcgcaaagagaactgtatgtaccaggcc
tgcccaacgcaggactgcaacaagaaggtgatcgatcagcagaatgggttgtaccgctgc
gagaagtgtgacagcgaattccccaacttcaagtaccgcatgatcctgtcggtaaatatt
gccgattttcaagagaatcaatgggtcacatgtttccaggagtctgcagaagccatcctt
gggcaaagcactgcttatcttggggagctaaaggagaagaacgagcaagcctttgaggaa
gttttccagaacgccaacttccggtctttcaccttcaggatcagagtcaaactggagacc
tacaacgatgagtctcgaattaagggcactgtgatggacgtgaagcccgtggactacaaa
gaatatggcagaaggctgatcatgagcatccgcaaaaacgcagccatgtga
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