Sus scrofa (pig): 100526149
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Entry
100526149 CDS
T01009
Symbol
PNN
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03013
Nucleocytoplasmic transport
ssc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100526149 (PNN)
03015 mRNA surveillance pathway
100526149 (PNN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100526149 (PNN)
03041 Spliceosome [BR:
ssc03041
]
100526149 (PNN)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100526149 (PNN)
Spliceosome [BR:
ssc03041
]
Complex C
Other components
EJC/TREX
100526149 (PNN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
100526149
NCBI-ProteinID:
NP_001231160
Ensembl:
ENSSSCG00000022828
UniProt:
A0A8D0PLD0
A0A4X1SUU5
LinkDB
All DBs
Position
1:169725649..169734003
Genome browser
AA seq
731 aa
AA seq
DB search
MAVAVRTLQEQLEKAKESLKNVDENIRKLTGRDPNDVRPIQARLLALSGPGGGRGRGSLL
LRRGFSDSGGGPPAKQRDLEGAVSRLGGERRTRRESRQESDPEDDDVKRPALQSSVVATS
KERTRRDLIQDQNMDEKGKQRNRRIFGLLMGTLQKFKQESTVATERQKRRQEIEQKLEVQ
AEEERKQVENERRELFEERRAKQTELRLLEQKVELAQLQEEWNEHNAKIIKYIRTKTKPH
LFYIPGRMCPATQKLIEESQRKMNALFEGRRIEFAEQINKMEARPRRQSMKEKEHQVVRN
EEQKSEQEEGKVAQREEELEETGNQHNDVEIEEAGEEEEKEIGIVHSDAEKEQEEEEQKQ
EMEVKMEEETEVRESEKQQDSQPEEVMDVLEMVESVKNVIAEQEVMETNQVESIEPSENE
TSKELEPEMEFEVEPDKECKSLSPAKENSSALEMENEPEEKEEKESEPQPEPMSQPQPLP
QPQPQSQPQPQPQAQTQAQCQSQSQPALQPQPLSQPETMPLAVLQPPPQAIQEQGHLPPE
RKEFPVESAKLTEVTVEPVLTVHPESKSKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSS
STSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTTSSSESRSRSRGRGHNRDRKH
RRSVDRKRRDASGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRSISESSRSGKRSSRSER
DRKSDRKDKRR
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcgcagtgagaactttgcaggagcagctagaaaaggccaaagagagcctaaag
aacgtagatgagaatattcgcaagctcaccgggcgggatccgaatgacgtgaggcccatc
caagccagattgctggccctgtctggtcctggtggaggtagaggacgtggtagtttattg
ctgaggcgtggattctcagatagtggaggaggacccccagccaaacagagagaccttgaa
ggggcagtcagtaggctgggcggggagcgtcggactcggagagaatcacgccaagaaagc
gacccagaggatgacgatgttaagaggccagctttgcagtcttcagttgtagctacctcc
aaagagcgcactcgtagagaccttatccaggatcaaaatatggatgaaaagggaaagcaa
aggaaccgacgaatatttggcttgttgatgggcacgcttcagaaatttaaacaagaatcc
actgttgctactgaaaggcaaaagagacgtcaggaaattgaacaaaaacttgaagtgcag
gcagaagaagaaagaaaacaggttgaaaatgagaggagagaactgtttgaagagagacgt
gctaaacagacagaactgcggcttttggaacagaaggttgagcttgcgcagctgcaagaa
gaatggaatgagcataatgccaagataattaaatatataagaactaagacaaagccccat
ttgttctatattcctggaagaatgtgtccagctacccaaaaactgatagaagagtcacag
agaaaaatgaatgctttatttgaaggtagacgcatcgaatttgcagaacaaataaataaa
atggaggctaggcctagaagacaatcaatgaaggaaaaagagcatcaggtggtgcgtaat
gaagaacagaagtcggaacaagaagagggtaaggtggctcagcgagaggaagagttggag
gagacaggtaatcagcacaatgatgtagaaatagaggaagcaggagaggaagaggaaaag
gaaataggtatagttcatagtgatgcagagaaagaacaggaggaagaggaacaaaaacag
gaaatggaagttaagatggaggaggaaactgaggtaagggaaagtgagaagcagcaggat
agtcagcctgaagaagtaatggatgtgctagagatggtggagagtgtcaaaaatgtaatt
gctgagcaggaagtaatggaaaccaatcaagttgaaagtatagaaccttcagaaaatgaa
actagcaaagaattggagccagagatggaatttgaagttgagccagataaagaatgtaaa
tctctttctcctgcaaaagagaattctagtgctctagaaatggaaaatgagcctgaggaa
aaagaagaaaaagaatccgagccccagcctgagcctatgtctcagcctcagcccctgcct
cagccccagccccagtcccagccacagccacagccacaggcccagacccaggcccagtgc
cagtcccagtcccaaccagcactccagccccagcctctctctcagcctgagactatgccc
ttagctgttttacagccaccacctcaggctattcaggagcaagggcatttaccacctgag
agaaaggagtttcctgtagaatctgcaaaactgactgaggtgacagtagagccagtcttg
acagtacatccagagagcaagagcaaaaccaaaactaggagcagaagtagaggtcgagct
agaaataaaacaagcaagagcagaagtcgaagcagtagcagtagtagttctagtagcagt
tcaaccagtagcagcagtggaagcagttctagcagtggcagtagtagtagtcgaagtagt
tccagtagcagctccagtacaagtggcagcagcagtagagacagtagcagcagcactacc
agtagtagtgagagtagaagtcgaagtaggggccggggacataacagagatagaaaacac
aggaggagtgtggatcggaagcggagggatgcttctggactagaaagaagtcacaaatct
tcaaaaggtggtagtagtagagatacaaaaggatcaaaggataagaattcccggtctgac
agaaagaggtctatatcagagagtagtcgatcaggcaaaagatcctcaagaagtgaaaga
gaccgaaaatcagacaggaaagacaaaaggcgttaa
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