Sus scrofa (pig): 100620242
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Entry
100620242 CDS
T01009
Symbol
RFC2
Name
(RefSeq) replication factor C subunit 2 isoform X1
KO
K10755
replication factor C subunit 2/4
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03030
DNA replication
ssc03410
Base excision repair
ssc03420
Nucleotide excision repair
ssc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100620242 (RFC2)
03410 Base excision repair
100620242 (RFC2)
03420 Nucleotide excision repair
100620242 (RFC2)
03430 Mismatch repair
100620242 (RFC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssc03032
]
100620242 (RFC2)
03036 Chromosome and associated proteins [BR:
ssc03036
]
100620242 (RFC2)
03400 DNA repair and recombination proteins [BR:
ssc03400
]
100620242 (RFC2)
DNA replication proteins [BR:
ssc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
100620242 (RFC2)
DNA Replication Termination Factors
ELG1-RFC complex
100620242 (RFC2)
Chromosome and associated proteins [BR:
ssc03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
100620242 (RFC2)
DNA repair and recombination proteins [BR:
ssc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
100620242 (RFC2)
Check point factors
HRAD17(Rad24)-RFC complex
100620242 (RFC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_22
AAA_14
AAA_16
RCF1-5-like_lid
Viral_helicase1
Mg_chelatase
AAA_24
AAA_11
Rad17
RuvB_N
AAA_assoc_2
DNAX_ATPase_lid
nSTAND3
AAA_19
MipZ
AAA_5
AAA_18
AAA_28
ABC_tran
AAA_25
AAA_23
AAA_30
NTPase_1
MeaB
RNA_helicase
SLFN-g3_helicase
FtsK_SpoIIIE
DUF815
Motif
Other DBs
NCBI-GeneID:
100620242
NCBI-ProteinID:
XP_020941996
UniProt:
A0A8D1X7X1
A0A287BRT6
LinkDB
All DBs
Position
3:complement(11373489..11392690)
Genome browser
AA seq
352 aa
AA seq
DB search
MDAGGSGSGADERGAQDPAPAPSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEV
FAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKM
FAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQ
SRCAVLRYTKLTDAQILARLLNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSG
FGFINSENVFKVCDEPHPLLVKEMIQHCVSANIDEAYKILAHLWHLGYSPEDIIGNIFRV
CKTFQMAEYLKLEFIKEIGYTHMRVAEGVNSLLQMAGLLARLCQKTVAPVAS
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggggggctccggcagtggcgcagacgaacgcggggcccaggatcctgccccg
gcccccagcaaggccccgggcagcgctggccactacgaactgccgtgggttgaaaaatac
agaccagtaaagttgaatgaaattgtcgggaatgaagacaccgtgagcaggctggaggtc
tttgcacgagaagggaacgtgcccaacatcatcattgctggccccccaggaacgggcaag
actacaagcatcctgtgtttggcacgagccctgctgggcccagccctcaaggatgctgtt
ctggagctcaatgcctcaaacgacagggggattgacgtggtgaggaacaaaatcaaaatg
tttgcccagcagaaggtcacccttcccaaagggcgacacaagatcatcatcctggatgaa
gcagacagcatgactgatggagcccagcaggccttgaggagaaccatggaaatctactcc
aaaacgacccgatttgctcttgcctgtaatgcttcggataaaatcatagagcccatccag
tcccggtgtgccgtcctccgctacaccaagctgaccgacgcccagattcttgccaggctg
ctgaacgtcatcgagaaggagaaggtgccgtacacggatgacggcttggaagccatcatc
ttcaccgcccagggcgacatgaggcaggccttgaacaacttgcagtctactttctcggga
tttggcttcatcaacagtgagaatgtgttcaaggtctgcgacgagccccaccccttgctg
gtgaaggagatgatccagcactgcgtgagcgccaacatcgatgaggcctacaagatcctc
gctcacctgtggcatcttggctattccccggaagacatcattggcaacatttttcgagtg
tgtaaaaccttccagatggcagaatacttgaaactggagtttattaaggaaatcggatac
actcatatgagagtagcagaaggcgtgaactcccttttgcagatggcagggctcctggcc
aggctgtgtcagaagacagtggccccggtggccagttag
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