KEGG   Sus scrofa (pig): 100620648
Entry
100620648         CDS       T01009                                 
Symbol
PER1
Name
(RefSeq) period circadian protein homolog 1 isoform X1
  KO
K21944  period circadian protein 1
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04710  Circadian rhythm
ssc04713  Circadian entrainment
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09150 Organismal Systems
  09159 Environmental adaptation
   04710 Circadian rhythm
    100620648 (PER1)
   04713 Circadian entrainment
    100620648 (PER1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ssc03400]
    100620648 (PER1)
DNA repair and recombination proteins [BR:ssc03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    100620648 (PER1)
SSDB
Motif
Pfam: Period_C Per3-like_PAS-A bHLH_PER PAS_3 PAS_11 PAS
Other DBs
NCBI-GeneID: 100620648
NCBI-ProteinID: XP_005657097
Ensembl: ENSSSCG00000017983
Vega: OTTSUSG00000001946
UniProt: A0A8D1RLF4
LinkDB
Position
12:complement(53361863..53376723)
AA seq 1277 aa
MSGPLEGADGGGDPRPGESFCPGGAPSPGPPQHRPCPGPSLADDTDANSNGSSGNESNGP
ESRGASQRSSHSSSSGNGKDSALLETTESSKSTNSQSPSPPSSSIAYSLLSASSEQDNPS
TSGCSSEQSARARTQKELMTALRELKLRLPPERRGKGRSGTLATLQYALACVKQVQANQE
YYQQWSLEEGEPCAMDMSTYTLEELEHITSEYTLRNQDTFSVAVSFLTGRIVYISEQAGV
LLRCKRDVFRGARFSELLAPQDVGIFYGSTAPSRLPTWGTGASAGSVLRDFAQEKSVFCR
IRGGPDRDPGPRYQPFRLTPYVTKIRVSDGAPAQPCCLLIAERIHSGYEAPRIPPDKRVF
TTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPF
DHSPIRFCARNGEYVTMDTSWAGFVHPWSRKVAFVLGRHKVRTAPLNEDVFTPPAPSPTL
ALDADIQELSEQIQRLLLQPVHSPSPTGLCGVGPATSPGPLLSPGSSSDSNGGDAEGPGP
PAPVTFQQICKDVHLVKHQGQQLFIESRARPCPRPRLPATGTFKAKTLPCQSPDLEVEAA
PAPSQVPPALAPEEAERKDASSCSYQQINCLDSILRYLESCNLPSTTKRKCASSSSCTAS
SASDDDKQRPGPVSMGAKKDPSAVLSGEGASPQKEPVVGGSLSPLALANKAESVVSVTSQ
CSFSSTIVHVGDKKPPESDIVMMEDLPGPPPGPAPSPTVAPDPAPDAYRPVGLTKAVLSL
HTQKEEQAFLSRFRDLGRLRGLDGSSTPPSAPGCPHGPAPPSRRHHCRSKAKRSRHHQTP
RAEAPCCVSHPSPVPSSAPWPPPPAATPFPAVVQPFPLPMFSPRGGPQPLPAAPTAVPPA
PFSAPLVTPMVALVLPNYLFPNPSSYPYGVAQAPAEGPPTPASHSPAPSLPPLPPSPPHR
PDSPLFNSRCSSPLQLNLLQLEEPPRVEAGAGAGGPGSSAGPPAPSQEAAEPEARLVEVT
ESSNQDALSGSSDLLELLLQEDSRSGTGSAASGSLGSALGSGSGSGSHEGGSTSASITRS
SQSSHTSKYFGSIDSSEAEAGAAQARAEPGDQVIKYVLQDPIWLLMANADQRVMMTYQVP
SRDMASVLKQDRERLRAMQKQQPRFSEDQRRELGAVHSWVRKGQLPRALDVMACVDCGSS
TQDPGHPDDPLFSEMDGLGLEPMEEGGGEGGEGEGGNEARAQAGAGASSSQDLAMEEEEQ
GGSSSSPALPATEDGTN
NT seq 3834 nt   +upstreamnt  +downstreamnt
atgagcggtcccctagaaggggctgatgggggaggggaccctaggccgggagaatccttc
tgtcctggaggggctccatcccctgggcctccacagcatcgaccttgtcccggccccagc
ctggctgatgacacggatgccaacagcaatggctccagtggcaatgagtccaatggaccc
gagtcccggggggcatcacagcggagctcacatagctcctcctcgggcaatggcaaggac
tcggccctgctggagaccactgagagcagcaagagcacaaactctcagagcccatcccca
cccagcagttccatcgcttacagcctcctgagtgccagctcggagcaggacaatccatct
accagtggctgcagcagtgaacagtcagcccgggcaaggacccagaaagaactcatgacg
gcgctgcgggagctcaagcttcggctgccaccagagcgcaggggcaagggccgctctggg
accctggccactctgcagtacgcgctggcctgtgtcaagcaggtgcaggccaaccaggaa
tactaccagcagtggagcctggaggagggcgagccttgcgccatggacatgtctacctac
accctggaggagctggagcacatcacgtccgagtacacgcttcgcaaccaggataccttc
tccgtggccgtctccttcctgaccggccgcatcgtctacatttccgagcaagcaggtgtc
ctgctgcgctgcaagcgggatgtgttccggggtgcccgcttctcagagctcctggctccc
caggacgtgggcatcttctatggctccactgccccctctcgcctgcccacctggggcacg
ggggcctcggcaggttcagtcctgagggacttcgcccaggagaagtccgtcttctgccgc
atcagggggggtcctgaccgagacccggggcctcggtaccagccattccgcctcaccccc
tatgtgaccaagatccgggtctcggatggagcccctgcacagccctgctgcctgctcatc
gcagagcgtatccactccggttatgaagcgccccggattccccccgacaagagggtcttc
accacacggcacacgcccagctgcctcttccaggacgtggatgagagggccgcccccctg
ctgggctacctcccccaggacctcctgggagccccagtgctccttttcctgcaccctgag
gaccgacccctcatgctggccatccacaagaagatcctgcagctggctggccagcccttt
gaccactcccctatccgcttctgcgcccggaacggggagtacgtcaccatggacaccagc
tgggctggcttcgtgcacccctggagccgcaaggtggcctttgtgttgggccgccacaaa
gtacgcacggcgcccctgaacgaggacgtgttcactcctccggcccccagccccactctg
gccctggacgccgatatccaggagctctcagagcagatccaacggctgctcttacagcct
gtacacagccccagccccacggggctctgtggagtcggccctgccacttccccgggtcct
ctcctcagccctggctcctccagcgacagcaacgggggggatgctgagggacctgggcct
cctgccccggtgaccttccagcagatctgtaaggacgtgcacctggtgaagcaccagggg
cagcagctcttcattgagtcccgggcacggccctgcccccggcctcgtctcccagctacg
ggcacattcaaggccaagactcttccctgccagtccccagacctagaggtggaggcggcc
cctgctccaagccaggttcctccagccttggcccctgaggaggctgagaggaaagacgcc
tccagttgctcctaccagcagatcaactgcctggacagcatcctcaggtacctggagagc
tgcaacctgcccagcaccaccaagcgcaaatgcgcctcctcctcctcctgcaccgcctct
tcggcctccgacgacgacaagcagaggccaggccccgtgtctatgggagctaagaaagat
ccgtcggcagtgctgtctggggagggggccagccctcagaaggagccggtggtgggaggc
agcctgagcccgctcgccctggccaataaggcggagagcgtggtgtccgtcaccagtcag
tgtagcttcagctccaccatcgtccatgtgggagacaagaagcccccggagtcggacatc
gtcatgatggaggacctgcctggcccgccgcccggcccggcccccagccccacggtcgcc
cctgacccagccccagacgcttaccgcccggtgggcctgaccaaggccgtgctgtccctg
cacacgcagaaggaggagcaggccttcctcagccgcttccgagaccttggcaggctgcgt
ggactcgacggctcctccacgcccccctcagcccctggctgcccccatggccctgcaccc
cccagccgccgacaccactgccgatccaaagccaagcgctcacgccaccaccagacccct
cgggccgaagccccctgctgtgtctcccacccctcacctgtgccatcctctgccccctgg
ccccccccaccagccgctactcccttcccagctgtggtccagcccttccccctccccatg
ttctcccccagaggcggcccccagcctctccccgccgcccccacagccgtgcctcctgca
cctttttctgcccccctggtgacccccatggtggctttggtgctccctaactatttgttc
cctaacccatcttcctatccctacggggtggcccaggcccccgccgaggggcctcctact
cctgcttcccactccccggccccgtctctgcccccgctgccccccagccctccacaccgc
ccagactctccgctcttcaactcaagatgcagctctccgctgcagctgaacctgttgcag
ctggaggagccccctcgtgtggaggcgggggctggagcagggggccctggaagcagtgct
gggccccccgctcccagccaggaggctgctgagccagaggccagactggtggaggtaact
gagtcctccaaccaggatgcgctctcgggctccagtgacctgctggagctgctgctgcaa
gaggactcgcgctctggcacaggctctgcggcctcgggctccttgggctctgccttgggc
tcggggtctggttcaggctcccacgaggggggcagcacctcagccagcatcacacgcagc
agtcagagcagccacacgagcaagtacttcggcagcatcgattcttccgaggcggaggcg
ggggctgcccaggccagggctgagcccggggaccaggtcatcaagtacgtgctccaggac
cccatctggctgctcatggccaacgctgaccagcgcgtcatgatgacctaccaggtgccc
tccagggacatggcctctgtgctgaagcaggaccgggagcggctccgggccatgcagaag
cagcagcctcggttctcggaggaccagcggagggagctgggggccgtgcactcctgggtc
cggaagggtcagctgcctcgggctcttgacgtgatggcctgtgtggactgcggcagtagc
acccaagaccccggccaccctgatgacccgctcttctcggaaatggatggactggggctg
gagcccatggaggagggtggcggcgaggggggtgagggtgagggtggcaatgaggcccgc
gcccaagctggagccggagcctcaagctctcaggacctggctatggaagaggaggaacag
ggtgggagctcgtccagtccagccttacctgccacagaagatggcaccaactag

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