Sus scrofa (pig): 100621114
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Entry
100621114 CDS
T01009
Symbol
NPAS3
Name
(RefSeq) LOW QUALITY PROTEIN: neuronal PAS domain-containing protein 3
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssc03000
]
100621114 (NPAS3)
Transcription factors [BR:
ssc03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
100621114 (NPAS3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS_11
PAS
PAS_9
PAS_4
HLH
bHLH_NPAS4
DUF7510
Motif
Other DBs
NCBI-GeneID:
100621114
NCBI-ProteinID:
XP_020955519
LinkDB
All DBs
Position
7:complement(65924986..66800820)
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AA seq
993 aa
AA seq
DB search
MIRIFPDFSVQVTAAAAGGAAAGVPAGAGMGRAGTAANGTPQNVQGITSYQQRITAQHPL
PNQSECRKIYRYDGIYCESTYQNLQALRKEKSRDAARSRRGKENFEFYELAKLLPLPAAI
TSQLDKASIIRLTISYLKMRDFANQGDPPWNLRMEGPPPNTSVKGIQMWKSELCMRKTPC
EVIGAQRRRSPSALAIEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQV
ELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGTAEDGASSASSSSQSETPEPVES
TSPSLLTTDNTLERSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQ
IMGLVVVAHALPPPTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCY
HFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNII
WVNYLLSNPEYKDTPMDIAQLPHLPEKTSESSETSDSESDSKDTSGITEDNENSKSDEKG
NQSENSEDPEPDRKKSGNTCDNDMNCNDDGHSSSNPDSRDSDDSFEHSDFENPKAAEDGG
GGFGALGPMQIKVERYVESESDLRLQNCESLSSDSAKDSDSAGEGGAQASSKHQKRKKRR
KRQKGGSASRRRLSSTSSPGGLDTGLVEPPRLLSSPNSASVLKIKTEISEPINFDNDSSI
WNYPPNREISRNESPYSMTKPPSSEHFPSPPGGTGGGGLHVAIPDSVLTPPGADGTAAAR
GKTQFSSSAPAALAPVXSDPLSPPLSASPRDKHPGGGSSGSGGGGGGGGGGGSGSSAPGA
SNSLLYTGDLEALQRLQAGNVVLPLVHRVTGTLAATSTAAQRVYTTGTIRYAPAEVTLAM
QGNLLPNAHAVNFVDVNSPGFGLDPKTPMEMLYHHVHRLNMSGPFGGAVSAASLTQMPAG
NVFTTAEGLFSTLPFPVYSNGIHAAQTLERKED
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgatccgaatctttccggatttcagcgtgcaggtgacggccgcggcggccggcggggcg
gccgcgggggtgccggccggcgcgggcatggggagggccggcaccgcggccaatggcacc
ccgcagaacgtccagggcatcacctcctaccagcagcgaataactgcccagcatcctctg
cccaaccaatcagaatgtaggaaaatctacagatatgacggaatctactgtgaatctacc
taccagaatttacaagcattgagaaaggagaagtctcgggatgctgctcgctcccgccgg
ggaaaagaaaactttgagttttatgaattggccaagttgttgcctcttcctgcagccatc
actagccagcttgacaaggcctccatcattcgacttacaatcagctatctgaaaatgagg
gactttgctaaccagggggaccctccgtggaacctgcggatggaaggccctccacctaac
acgtcagtcaaagggatacaaatgtggaaatctgaactctgcatgagaaagacaccatgt
gaagttataggtgcacaaagaaggagaagccccagtgcactggccattgaagtatttgaa
gcacatttgggaagtcacattttgcagtccctggatggctttgtatttgcactaaatcaa
gaaggaaaatttttgtacatttctgaaacagtctccatctacctaggcctctcacaagtg
gagctgacaggcagcagcgtctttgactatgtccatcccggagaccatgtggagatggca
gagcagctgggcatgaagctcccgcctgggcggggtctcctctcccagggcactgctgaa
gatggagccagttcagcgtcttcctcctcccagtcggagacccctgagccagtggaatca
accagccccagtctgctaaccactgacaacacccttgagcgttcctttttcatccgaatg
aaatctactctgaccaaacgcggcgtgcacatcaaatcatcaggatataaggtgattcac
ataacaggccggctacgactgagggtgtcgctgtcccacgggaggactgtccccagccaa
atcatgggtcttgtggtcgtggctcatgccttgcctccacctacgatcaatgaagtcaga
attgactgccatatgttcgtcactagagtaaatatggacctcaatatcatttactgtgaa
aataggattagtgactatatggatctgacccccgtagacatcgtagggaagagatgctac
cacttcatccacgctgaagacgtggagggcatcaggcacagtcacctggacctgctgaat
aagggccagtgtgtgaccaagtactatcgttggatgcagaagaatggaggatacatttgg
atacagtctagtgccaccatagctattaatgccaagaacgccaatgagaagaatatcatc
tgggtgaattatcttcttagcaaccctgagtacaaagacacgccgatggacattgcacag
ctcccccacctgccagagaaaacttcagaatcctcggagacatccgactctgaatccgac
tctaaagacacctcaggtattacagaggataatgagaactccaagtccgatgagaagggg
aatcagtccgagaacagcgaagacccagagcccgaccggaagaagtcgggcaacacgtgc
gacaacgacatgaactgcaacgacgacggccacagctccagcaacccagacagccgcgac
agcgatgacagcttcgagcactcggactttgagaaccccaaggcggcggaggacggcggc
ggcggcttcggcgcgctgggccccatgcagatcaaggtcgagcgctatgtggagagcgag
tcggacctgcggctgcagaactgcgagtcgctgtcctccgacagcgccaaggactcggac
agcgcgggcgaggggggcgcgcaggcctccagcaagcatcagaagcgcaagaagaggcgg
aaacggcagaagggcggcagcgccagtcgccggcgcctatccagcacgtcgagccccggc
ggcctggacacgggcctggtggaacccccgcggctgctgtcctcccccaacagtgcctcg
gtgctcaagatcaagacggagatctcggaacccatcaacttcgacaacgacagcagcatc
tggaactacccgcccaaccgggagatctcccggaacgagtcgccctacagcatgaccaag
ccccccagctcagagcacttcccgtccccgccgggcggcacgggcggcggggggctgcac
gtggccatccccgactcggtcctcaccccgcccggcgccgacggcaccgccgcagcccgc
ggcaagactcagttcagctcctcggctcccgcggccttggcccccgtcngctccgacccg
ctgtcgcccccgctctcggcgtccccgcgggacaagcacccgggaggcgggagcagtggt
agtggtggcggtggcggtggcggcggcggcggcggcagcggcagcagtgccccgggagcc
tccaactccttgctgtacactggggacctggaggcgctgcagcggttgcaagccggcaac
gtcgtgctgccgctggtgcatagggtgaccgggaccctggcggccaccagcacggccgcg
cagagggtctacaccacgggcaccatccgatacgcgccggccgaggtgaccctggccatg
cagggcaacctgctgcccaacgcgcacgctgttaacttcgtggacgttaacagccccggc
ttcggcctcgaccccaagacgcccatggagatgctctaccaccacgtgcaccggctcaac
atgtcgggaccgttcggcggcgcagtgagcgcggccagcctgacgcagatgcccgccggc
aacgtgttcaccacggctgagggactcttctccacgctgcccttccccgtctacagcaac
ggcatccacgcggcacagactttggagcgcaaggaggactga
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integrated database retrieval system
