Sus scrofa (pig): 100621126
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Entry
100621126 CDS
T01009
Symbol
UPF2
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03013
Nucleocytoplasmic transport
ssc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100621126 (UPF2)
03015 mRNA surveillance pathway
100621126 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100621126 (UPF2)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100621126 (UPF2)
mRNA cycle factors
P-body specific factors
100621126 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
100621126
NCBI-ProteinID:
XP_020920653
LinkDB
All DBs
Position
10:59893106..59993403
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AA seq
1271 aa
AA seq
DB search
MPAERKKPASMEEKESLLNNKEKDCSERRPVSSREKPKDEIKLTVKKEVIKVPEDKKKKL
EEDKRKKEDKERKKKEEEKVKAEEELKKKEEEXKKKHEEEEKKKQEEQVKRQQEEEAAQL
KEKEESLQLHQEAWERHQLRKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKSCLNKESNKDDSKEAKEPKDNKEIPNPDDLELELENLEINDDPLELEGGDEAE
DLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
KKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIE
TKNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYK
DLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGV
NPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVQDLEREFLIKLGLVNDKDSKD
SLTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNDDDEGEEEEEENTDYLTD
SNKENETDEENTEVMIKGGGLKHVPCVEDEDFIQALDKMMLENLQQRSGESVKVHQLDVA
IPLHLKSQLRKGPPLGGGEGEAESADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQ
QQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNA
DLIFKTGGRRR
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgcaaaaagccagcaagtatggaagaaaaagaatctttactaaacaac
aaagaaaaagactgcagtgaaaggcggccagtgagcagcagggagaagccaaaagacgag
atcaagcttactgtcaagaaggaggttattaaggtccctgaagataagaagaagaaacta
gaagaagataagaggaaaaaagaagacaaggaacgcaagaaaaaagaagaagaaaaggtg
aaggcagaggaggaattaaagaaaaaagaggaagaangaaaaaagaaacatgaagaagaa
gagaaaaagaagcaagaagagcaggtgaaacgtcagcaggaagaagaggctgcccagttg
aaagagaaagaagaatccctccagcttcatcaagaagcttgggaacgccatcagttaagg
aaggaacttcgtagcaaaaaccaaaatgctccagacaaccgaccagaggaaaatttcttc
agccgactagactcaagtttgaagaaaaatactgcttttgtcaagaaactaaaaactatt
acggaacaacagagagactccttgtcccatgattttaatggcctgaatttaagcaaatac
attgcagaggctgtagcttccattgtggaagcaaagctaaaaatatctgatgtgaattgt
gctgtgcacttatgctctctctttcaccagcgctacgctgactttgccccatcacttctt
caggtttggaaaaaacattttgaagcaaggaaagaagagaaaacacctaacattaccaag
ctaagaactgatttgcgtttcattgcagaattgacaatagttgggattttcaccgacaag
gaaggtctctccttaatctatgaacagctaaaaaatattattaatgctgatcgggaatcc
catacccatgtttctgtggtgattagtttttgtcgacattgtggagatgatattgctgga
cttgtaccaaggaaagtaaagagtgctgcagagaagtttaatttgagttttcctcctagt
gagataattagtccagagaaacagcaacctttccagaatcttttaaaagagtactttacg
tctttgaccaaacacctgaaaagggaccacagggagctacagaatactgagagacaaaac
aggcgtattctccattctaaaggggagctaagtgaagatagacataaacaatatgaggaa
tttgctatgtcttatcagaagctgctggcaaattctcaatccttagcagaccttttggat
gaaaatatgccagatcttcctcaagacaaaccaacaccggaagagcatgggcctggaatt
gacatatttacacctggtaaacctggagaatatgacctggaaggtggtatatgggaagac
gaagatgctcggaatttttatgagaacctcattgatttgaaagcttttgttccagccatt
ttatttaaagataatgaaaaaagttgtctgaataaagagtccaacaaggatgattccaaa
gaagcaaaagaacctaaggataataaggagataccaaatcctgatgatttggagcttgag
ttggagaacctagaaattaatgatgatccgttggagttagagggtggagatgaagctgaa
gatcttacgaagaaacttcttgatgaacaagaacaagaggatgaagaagccagcactgga
tctcatctcaagctcatagttgatgctttcctccagcaattgcccaactgtgtcaaccgt
gatctcatagacaaggcagcaatggatttttgcatgaacatgaacacgaaagcaaatagg
aagaaattggtgcgggcactctttatagttcccagacaaaggttggatttgctaccattt
tatgcaagattggttgctacattgcatccctgcatgtctgatgtagcagaggatctttgt
tccatgctgaggggggatttcagatttcatgtacgaaaaaaggaccagatcaatattgaa
acaaagaacaaaactgttcgatttattggagaactcactaagtttaagatgttcacaaaa
aatgatacactgcattgtttaaagatgcttctatcagacttctcccatcaccatattgaa
atggcatgtaccctgctggaaacatgtggaagatttcttttcagatctccggaatctcac
ctgaggaccagtgtacttttggaacaaatgatgagaaagaaacaggcgatgcatctcgat
gcaagatatgtcacaatggtggagaatgcctattactactgcaacccgcctccagctgaa
aaaacagtgaaaaagaaacgtcctcctctccaggaatatgtccggaaacttttgtacaag
gatctctccaaggttaccacagagaaggttttgagacagatgcgaaagttgccctggcag
gaccaagaagtgaaagactatgttatttgttgtatgataaacatctggaatgtgaagtac
aacagcattcattgtgtagccaatctcttggcaggactagtgctctatcaggaggatgtt
ggaatccatgttgtggacggagttttagaagatatccgactaggaatggaggttaatcaa
cctaaatttaatcagagacgtatcagcagtgccaagttcttaggagaactttataattac
cgaatggtggaatcggctgtaatttttagaactctttattcttttacttcatttggggtc
aaccctgatggctctccaagttcgctggacccgcctgagcaccttttcaggattagacta
gtgtgcactattttggacacctgtggccagtactttgatagaggatccagtaaacggaaa
cttgattgcttccttgtgtattttcagcgttatgtttggtggaagaaaagtttggaggtt
tggacaaaagaccatccatttcctattgacatagattacatgatcagtgacacactagaa
ctgctaagaccaaagatcaaactctgtaattctctggaagaatccatcaggcaggtacaa
gacttggaacgagaattcttaataaaactaggtctagtaaatgacaaagactcaaaagat
tctctgacagaaggagaaaatcttgaagaggacgaagaagaagaagaaggaggagctgaa
acagaggaacaatctggaaatgaaagtgaagtgaatgagccagaggaagaggagggttcg
gataatgatgatgatgaaggagaggaagaagaggaagagaatacagattacctcacagat
tccaataaggagaatgaaactgatgaagaaaatactgaggtaatgattaaaggaggggga
ctgaaacacgtaccttgtgtagaagatgaggacttcattcaagctctggataaaatgatg
ctggaaaatcttcagcaacgaagtggcgaatctgttaaggtgcaccaacttgatgtggcc
attcccttgcatctcaaaagccagctgaggaaagggcccccactcgggggtggggaagga
gaggcagagtctgcagatacgatgccgttcgttatgttaaccagaaaaggcaataaacag
cagtttaaaatccttaatgtacccatgtcttcccaacttgctgcaaatcattggaaccaa
caacaggcagaacaagaagagaggatgagaatgaaaaaactcacactagatatcaatgaa
cggcaagaacaagaagattatcaagagatgctgcagtctcttgcacagcgcccggctcca
gcaaacaccaatcgggagcggcggcctcgttaccaacatccaaagggagcgcctaacgcg
gatctaatctttaagactggtgggaggagacgttga
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