KEGG   Sus scrofa (pig): 100621559
Entry
100621559         CDS       T01009                                 
Name
(RefSeq) T-cell receptor beta-1 chain C region
  KO
K10785  T-cell receptor beta chain V region
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04014  Ras signaling pathway
ssc04015  Rap1 signaling pathway
ssc04020  Calcium signaling pathway
ssc04064  NF-kappa B signaling pathway
ssc04514  Cell adhesion molecule (CAM) interaction
ssc04612  Antigen processing and presentation
ssc04658  Th1 and Th2 cell differentiation
ssc04659  Th17 cell differentiation
ssc04660  T cell receptor signaling pathway
ssc04672  Intestinal immune network for IgA production
ssc04940  Type I diabetes mellitus
ssc05135  Yersinia infection
ssc05142  Chagas disease
ssc05144  Malaria
ssc05150  Staphylococcus aureus infection
ssc05162  Measles
ssc05166  Human T-cell leukemia virus 1 infection
ssc05169  Epstein-Barr virus infection
ssc05170  Human immunodeficiency virus 1 infection
ssc05202  Transcriptional misregulation in cancer
ssc05235  PD-L1 expression and PD-1 checkpoint pathway in cancer
ssc05310  Asthma
ssc05320  Autoimmune thyroid disease
ssc05321  Inflammatory bowel disease
ssc05322  Systemic lupus erythematosus
ssc05323  Rheumatoid arthritis
ssc05330  Allograft rejection
ssc05332  Graft-versus-host disease
ssc05416  Viral myocarditis
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04014 Ras signaling pathway
    100621559
   04015 Rap1 signaling pathway
    100621559
   04064 NF-kappa B signaling pathway
    100621559
   04020 Calcium signaling pathway
    100621559
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecule (CAM) interaction
    100621559
 09150 Organismal Systems
  09151 Immune system
   04612 Antigen processing and presentation
    100621559
   04660 T cell receptor signaling pathway
    100621559
   04658 Th1 and Th2 cell differentiation
    100621559
   04659 Th17 cell differentiation
    100621559
   04672 Intestinal immune network for IgA production
    100621559
 09160 Human Diseases
  09161 Cancer: overview
   05202 Transcriptional misregulation in cancer
    100621559
   05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
    100621559
  09172 Infectious disease: viral
   05166 Human T-cell leukemia virus 1 infection
    100621559
   05170 Human immunodeficiency virus 1 infection
    100621559
   05162 Measles
    100621559
   05169 Epstein-Barr virus infection
    100621559
  09171 Infectious disease: bacterial
   05135 Yersinia infection
    100621559
   05150 Staphylococcus aureus infection
    100621559
  09174 Infectious disease: parasitic
   05144 Malaria
    100621559
   05142 Chagas disease
    100621559
  09163 Immune disease
   05310 Asthma
    100621559
   05322 Systemic lupus erythematosus
    100621559
   05323 Rheumatoid arthritis
    100621559
   05320 Autoimmune thyroid disease
    100621559
   05321 Inflammatory bowel disease
    100621559
   05330 Allograft rejection
    100621559
   05332 Graft-versus-host disease
    100621559
  09166 Cardiovascular disease
   05416 Viral myocarditis
    100621559
  09167 Endocrine and metabolic disease
   04940 Type I diabetes mellitus
    100621559
SSDB
Motif
Pfam: C1-set Ig_3 C2-set_2 NADH_u_ox_C
Other DBs
NCBI-GeneID: 100621559
NCBI-ProteinID: XP_020934560
LinkDB
Position
18:complement(7420978..7426977)
AA seq 235 aa
MQGGEGFCTGLGGRDSETQYFGPGTRLLVLGERGQRGWGFVGSPRAVFCRCRPELWGWQA
ADCAEDLQQVRPPKVAVFEPSEAEISRTQKATLVCLATGFYPDHVELSWWVNGKQVQSGV
STDLQPYREDPSRNDSSYCLSSRLRVTAAFWHNPRNHFRCQVQFYGLTEDDEWEYNWTKP
ITQNISAEAWGKAASYQQGVLSATLLYEILLGKAALYAVLVSALVLMATVKRKGA
NT seq 708 nt   +upstreamnt  +downstreamnt
atgcagggaggggagggattttgcacggggttggggggccgtgattcagagacccagtac
ttcgggccgggcacccggctcctggtgctaggtgagcgtgggcagcgcggctggggtttc
gtgggtagtcccagggctgtgttctgcaggtgccgcccagagctttggggctggcaggca
gccgactgtgcggaggacctgcagcaggtgagaccacccaaggtggccgtgtttgaacca
tcggaagcggagatctcccggacccagaaggccaccctcgtgtgcctggccacaggcttc
taccccgaccacgtggagctgagctggtgggtgaacgggaagcaggtccagagcggggtc
agcacggaccttcagccctacagggaggaccccagccgcaatgactccagctactgtctg
agcagccggctgagggtcaccgccgccttctggcacaacccccgcaaccacttccgctgc
caagtccagttctatgggctcacggaggacgacgagtgggagtacaactggaccaagccc
atcacccagaacatcagtgcggaggcctggggcaaagcagcgtcctatcaacaaggggtc
ctgtccgccaccctcctctatgagatcctgctggggaaggccgccctgtacgctgtgctg
gtcagcgccctggtgctgatggccacggtcaagagaaagggtgcctga

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