Sus scrofa (pig): 100621798
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Entry
100621798 CDS
T01009
Symbol
HDAC6
Name
(RefSeq) histone deacetylase 6 isoform X2
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04613
Neutrophil extracellular trap formation
ssc05014
Amyotrophic lateral sclerosis
ssc05034
Alcoholism
ssc05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
100621798 (HDAC6)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
100621798 (HDAC6)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
100621798 (HDAC6)
09165 Substance dependence
05034 Alcoholism
100621798 (HDAC6)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ssc01009
]
100621798 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100621798 (HDAC6)
04131 Membrane trafficking [BR:
ssc04131
]
100621798 (HDAC6)
03036 Chromosome and associated proteins [BR:
ssc03036
]
100621798 (HDAC6)
Enzymes [BR:
ssc01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
100621798 (HDAC6)
Protein phosphatases and associated proteins [BR:
ssc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100621798 (HDAC6)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
100621798 (HDAC6)
Membrane trafficking [BR:
ssc04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
100621798 (HDAC6)
Chromosome and associated proteins [BR:
ssc03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
100621798 (HDAC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
LysX_preATP_grasp
Motif
Other DBs
NCBI-GeneID:
100621798
NCBI-ProteinID:
XP_003360363
Ensembl:
ENSSSCG00000025545
UniProt:
A0A8D0XH36
I3LEZ7
LinkDB
All DBs
Position
X:42917911..42941894
Genome browser
AA seq
1117 aa
AA seq
DB search
MTSTGQDSTTTRQRRSRHNPHSPPHDSSVTSKRGVKKGAGLRSSPNLADVKKKGRMKKLS
QAAEQDLIVGLQGLDLNLEARTPSGTGLVLDEQLNEFHCLWDDSFPEGPERLHAIKEQLM
QEGLLDRCVSFQARFAEKEELMLVHSLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNS
YTCACLASGSVLRLVDAVLGAEIRNGMAIIRPPGHHAQHSLMDGYCMFNHVALAARYAQQ
KHDVQRVLIVDWDVHHGQGTQFTFDQDPSVLYFSIHRYEQGRFWPHLKASNWSTTGFGQG
QGYTINVPWNQVGMRDADYIAAFLHLLLPVALEFQPQLVLVAAGFDALQGDPKGEMAATP
AGFAQLTHLLMGLAGGKLILSLEGGYNLRSLAEGVSASLHTLLGDPCPLLEFPGAPCPSA
QASLSCALEALEPFWEVLVRSAETLEDEDTVEGDHVEEEEEPWQPPELPMLAWPVLQART
GLVYDQQMMDHYNLWDSHHPEMPQRILRIMRRLEELGLAGRCLALPARPATDAELLACHS
AEYVSRIRATEKMRTRELHREGANYDSIYICPGTFACAQLAAGAACRLVEAVLAGEVLNG
IAVVRPPGHHAERDSACGFCFFNSVAVAARHAQAISGHALRILIVDWDVHHGNGTQHLFE
EDPSVLYISLHRYDHGTFFPMGDEGASSQIGQAAGTGFTVNVAWNGPRVGDPEYLAAWHR
LVLPIAYEFNPELVLVSAGFDAARGDPLGGCQVSPECYAHLTHLLMGLANGRIILILEGG
YNLISISESMAACTRSLLGDSPPLLTLLRPPLSRALASIAETTQIHRRYWRSLRVTKVED
KERPSSSKSFAKKPSQPAKPKPSKGMTAPKGDIPEAHTGKATSVSSVKVSPPGQTKSEAA
LVELTQDQSSKAATEEAVGGAKLIQSPPASGGDNQTPPASPRQGSTTLISPSKLVGNLGA
LELRNEVQESPKEEGLLGEAAGGQNMDNLMLMQVFGNQADTDQAMFYAVSPLLWCPHVVA
VRPVPEAGLDVTQPCQDCGALQENWVCLSCYQVCCGRYINAHMLQHHESSGHPMVLSYAD
LSTWCYPCQAYVHHEALLAVKNIAHQNKFGEGVPHSR
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgacctccaccggccaggattccaccacaaccaggcagcgaagaagtaggcacaacccc
cactcccccccacacgactccagcgtcacctcgaagcgaggtgttaaaaagggtgccgga
ctccgctccagccccaatctagcggatgtaaagaagaaaggcagaatgaagaagcttagc
caagcagccgagcaagacctaatcgtggggctccaagggctggatctgaacctggaggcc
aggacaccgtctggcactggcttggtgttggatgagcagctaaatgaattccactgcctc
tgggatgacagcttccctgaaggccctgagcggctccatgccatcaaggagcagctgatg
caggagggcctcctggaccgctgcgtgtcctttcaggcccgattcgccgaaaaggaggag
cttatgttggttcacagcctagagtacattgatctgatggagacgacccagtacatgaat
gagggggagctccgcgtcctagcagacacctatgattcggtttatctgcatccgaactca
tacacctgtgcctgcctggcctcaggctccgtcctcaggctggtggatgccgtcctgggg
gctgagatccggaatggcatggccatcatcaggcctcctggacaccacgcccagcacagt
cttatggacgggtattgcatgttcaaccacgtagccttggccgcccgctacgctcagcag
aagcatgacgttcagagggtccttattgtggattgggatgtgcaccatggtcagggaaca
cagttcacctttgaccaagaccccagcgtcctctatttctccatccaccgctatgagcag
ggtcggttctggccccaccttaaggcctctaattggtccaccacgggttttggccaaggc
cagggatacaccatcaatgtgccttggaaccaggtggggatgcgagatgccgactacatt
gctgctttcctgcacctcctgctgccagtcgcccttgagttccagccccagctggtcctg
gtagccgctggctttgatgccctccaaggggaccccaagggtgagatggccgccactccg
gcagggttcgcccagctaactcatctgctcatgggtctggcaggaggcaagttgatcctc
tcactggagggcggctacaacctccgctccctggctgagggcgtcagtgcctcactccac
acccttctgggagacccttgtcccttgctggagttcccgggcgccccctgtcccagtgcc
caggcgtcactatcctgtgctctggaagcccttgagcccttctgggaggtccttgtgaga
tctgctgagaccctggaggacgaggacaccgtggagggggaccatgtggaggaggaggag
gaaccatggcagccccctgagctaccgatgctggcgtggccggtgctgcaggctcgcaca
gggctggtctacgaccaacagatgatggatcactacaacttatgggacagccaccacccc
gagatgcctcagcgcatcctgcgtatcatgcgccgactggaggagctgggcctcgccggg
cgctgcctcgctctgcccgcccgtcccgccacggatgctgagctgcttgcctgccacagt
gctgaatacgtgagtcgcatccgggccacggagaagatgaggacccgggagctgcaccgc
gagggtgccaactatgactccatctacatctgccctggcaccttcgcctgtgcgcagctg
gccgcgggcgccgcctgccgcctggtggaggctgtgctggcaggagaggttttgaatggt
attgccgtggtgcgcccccctggacaccacgcagaaagggactcggcttgcggtttctgc
tttttcaattctgtggcagtagctgctcgccatgctcaggccatcagtgggcatgcgctg
cggatcctgatcgtggactgggacgtccatcatggtaacggcactcagcacttatttgag
gaggaccccagcgtgctctacatttccctgcaccgctacgatcatggcaccttctttccc
atgggggatgagggtgccagcagccagataggtcaggctgcaggcacgggcttcactgtc
aacgtggcctggaatgggccccgcgtgggtgaccccgagtacctggctgcatggcatcgg
ctggtgcttcctattgcctatgagtttaacccggaactggtgctggtctcagctggtttc
gacgctgcccggggggacccgctgggtggctgccaggtgtcacctgagtgctacgcccac
ctcacccacctgctgatgggcctggccaatggccgtattattctaatcctagagggtggc
tataacctgatatccatctcggagtccatggctgcctgtacccgctccctccttggggac
tcaccacccctgctgaccctgctgaggcccccactctcacgggccctggcctcgatcgcc
gaaaccacccaaatccatcgcagatactggcgcagcttgcgggtcacaaaggtcgaagac
aaagagagaccctccagttctaagtcgttcgccaagaagccatcccaaccagccaagcct
aagccatccaaggggatgaccgccccaaaaggggacattccggaagcacacacagggaag
gccacctcggtatcatcagtgaaagtgtcccccccaggccagacgaagtcagaggcagcc
ctagtggaacttactcaggaccagtcctcaaaggctgccacagaggaggctgtgggagga
gctaagctgatccaaagccctccagcctcgggaggtgacaaccagactcctccagcttct
ccacggcaaggatccacaactctgatctcccccagcaagctggtaggcaatctcggagcc
ttggaactgagaaatgaggttcaggagtccccaaaagaggaagggctgctaggagaggca
gctggaggtcagaacatggacaatttaatgctgatgcaggtctttggaaaccaagctgac
actgaccaggccatgttctatgctgtgtcaccactgctctggtgtccacatgtggtggca
gtacgccccgtacctgaagcgggcctggacgtgacccaaccttgtcaagactgtggagca
ctccaggagaactgggtgtgtctgtcttgctatcaggtctgctgcggccgttatatcaac
gcccatatgctccagcaccacgaaagctcaggccaccccatggtcctcagctacgccgac
ctgtctacctggtgttacccctgccaggcctatgttcaccacgaggctctcctggctgtg
aagaacatcgcccaccagaacaagtttggggagggcgtgccccactcccgctag
DBGET
integrated database retrieval system
