Sus scrofa (pig): 100621911
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Entry
100621911 CDS
T01009
Symbol
COL9A2
Name
(RefSeq) collagen alpha-2(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04151
PI3K-Akt signaling pathway
ssc04510
Focal adhesion
ssc04512
ECM-receptor interaction
ssc04820
Cytoskeleton in muscle cells
ssc04974
Protein digestion and absorption
ssc05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100621911 (COL9A2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100621911 (COL9A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100621911 (COL9A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100621911 (COL9A2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100621911 (COL9A2)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
100621911 (COL9A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ssc00535
]
100621911 (COL9A2)
Proteoglycans [BR:
ssc00535
]
Extracellular matrix (ECM) proteoglycans
Others
100621911 (COL9A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
100621911
NCBI-ProteinID:
XP_003356382
Ensembl:
ENSSSCG00000023322
UniProt:
A0A4X1VVW1
I3L8B2
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All DBs
Position
6:complement(96065282..96081547)
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AA seq
688 aa
AA seq
DB search
MAPAAAPRNLLILLQVLGLALAQIRGPPGERGPPGPPGPPGVPGSDGIDGDKGPPGKAGP
PGPKGEPGKPGPDGPDGKPGIDGLTGAKGEPGPMGIPGVKGQPGLPGPPGLPGPGFAGPP
GPPGPVGLPGEIGITGPKGDPGPEGPSGPPGPPGKPGRPGTIQGLEGSADFLCPTNCPAG
VKGPPGLQGVKGHPGKRGLLGDAGRQGKPGPKGDVGASGEQGIPGPPGPQGVRGYPGMAG
PKGEMGPQGYKGMVGSVGAAGSPGEEGPRGPPGRAGEKGDVGSQGVRGPQGITGPKGATG
PPGIDGKDGTPGTPGMKGSAGQAGRPGNPGHQGLAGMPGQPGTKGGPGDKGEPGQRGFPG
VSGPPGKEGEPGPQGEIGPQGIMGQKGDHGERGPVGQPGPQGRQGPKGEQGPPGIPGPQG
LPGIKGDKGSPGKTGPRGGVGDPGVAGLPGEKGEKGESGEPGPKGQQGVRGEPGYPGPSG
DAGAPGVQGYPGPPGPRGLVGDRGLPGLPGRQGVAGRDASDQHIEDVMLKMMQEQLAEMA
VSAKREALGATGMVGPPGPPGPPGYPGKQGPHGHPGPRGIPGIVGAVGQIGNTGPKGKRG
EKGDRGEVGRGHPGMPGPPGIPGLPGRPGQAINGKDGDRGAPGAPGEAGRPGLPGPMGLP
GFCEPAACLGASAYASARLTEPGSIKGP
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggcgcctgcggccgccccccgcaacctcctgattctcctgcaggtgctcgggctcgcc
ctagcgcagatcagaggtccgccaggagaacgagggcccccggggccccctgggcctcca
ggagtgcctggatccgacggaatcgacggtgacaagggaccccctgggaaagctggccct
ccgggacctaagggagagcctggcaaaccagggccagatgggccagacgggaagccaggg
attgacggtctaactggagccaagggggagcctggtcccatggggatccctggagtcaag
ggccagcccgggctcccaggtccccctggcctgccaggccctggcttcgctggacctcct
ggaccacctggacctgttggcctccctggtgagattggaatcacaggccccaagggggat
ccgggaccagaaggaccatcaggacccccggggccccctgggaaaccgggtcgcccagga
accatccagggcctggaaggcagtgcggatttcctgtgtccaaccaactgtccagcgggc
gtgaaaggccccccagggctgcagggagtgaaggggcatcctggcaaacgtgggcttctg
ggagatgccggccgccaggggaagccgggtcccaagggagatgtgggtgcctctggagag
caaggcattcccggaccgccgggtccccagggtgtcaggggctacccaggcatggcagga
cccaaaggagaaatgggtcctcaaggatacaaaggcatggtgggctccgtcggcgctgcc
gggtcaccaggcgaggaaggtccgagggggccaccaggccgagctggggagaagggtgac
gtgggcagccaaggtgttcgaggaccccagggaataacaggcccaaagggagcaaccggc
cccccgggcatcgatggcaaggacgggactccaggcacacctggcatgaagggcagtgca
ggacaggcggggcggccaggaaatccaggccaccagggcctagcgggtatgcccggccag
cctgggacaaaaggaggccctggagacaagggtgagcctggccaacggggcttcccagga
gtctctggtccccccgggaaggagggagagccagggcctcaaggagaaatcggtccccag
ggcatcatgggacagaagggtgaccacggtgagagggggccagtggggcagcccggccct
caaggccggcagggccccaagggggagcagggccccccaggaattccaggaccacaaggc
ttgccaggcatcaagggagacaagggctccccagggaagaccgggccccgcggcggagtg
ggcgacccgggagtggctggcctcccaggagagaaaggcgagaagggcgagtctggcgag
ccggggcccaagggacagcaaggagtccgcggagaacccggctacccaggccccagcggc
gatgcaggcgccccgggggtgcagggctatcccggaccccccggccctcgaggactggtt
ggcgacagaggcttgcccggactgcccgggaggcagggcgtggcgggccgagatgccagc
gaccagcacatcgaggatgtgatgctgaagatgatgcaagagcaactggcagagatggct
gtgagtgccaagcgggaagccctgggtgcaaccgggatggtgggtcccccaggacccccc
gggcctcctgggtacccaggcaaacagggaccccatgggcaccctggccctcggggcatt
cctggcatcgtgggagctgtgggtcagatcggcaacaccgggcccaaggggaaacgagga
gagaagggggacaggggagaagttggacgtgggcatcccgggatgcctgggcccccaggg
attccaggactgcctggccggcctggccaggcaatcaacggcaaagatggagatcgaggg
gccccaggggccccaggagaggcaggccgacctggcttgccgggccccatggggctgcca
ggcttctgtgagcctgcagcctgccttggagcctcagcctacgcctctgcacgcctcacg
gagcctggatccatcaaagggccgtga
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