Sus scrofa (pig): 100622181
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Entry
100622181 CDS
T01009
Symbol
CPSF3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3 isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100622181 (CPSF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssc03021
]
100622181 (CPSF3)
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100622181 (CPSF3)
Transcription machinery [BR:
ssc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100622181 (CPSF3)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
100622181 (CPSF3)
U7-dependent histone pre-mRNA processing factors
100622181 (CPSF3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
CopK
Motif
Other DBs
NCBI-GeneID:
100622181
NCBI-ProteinID:
XP_003354974
Ensembl:
ENSSSCG00000020799
UniProt:
A0A4X1UGM3
A0A8D1EW24
LinkDB
All DBs
Position
3:complement(126868519..126905699)
Genome browser
AA seq
684 aa
AA seq
DB search
MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID
PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD
MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF
SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV
FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ
NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE
GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE
QNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQR
VSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLSYQLQKLTGDVEEL
EIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQK
VSKKLEMHVYSKRLEIMLQDIFGEDCVSVKDGSVLSVTVDGKTANINLETRTVECEEGSE
DDESLREMVELAAQRLYEALTPVP
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgattcctgcagaggagagtgaccagctgctgatccgaccccttggcgctggg
caagaagtgggaagatcatgtattattctggagttcaaaggaagaaagataatgctggac
tgtgggatccaccctggcctggaaggaatggatgctcttccttatatcgatttaattgac
ccagctgagatcgatctcctgctcattagtcatttccacttggatcactgtggagctttg
ccctggtttctgcagaagacgagtttcaaaggaagaacttttatgacacatgccaccaag
gctatttacagatggctgctttcagattatgtcaaagtgagtaatatatccgctgacgac
atgctgtataccgagacagacttggaagagagcatggacaaaattgaaaccatcaacttc
cacgaagtgaaggaggtggccggaatcaagttttggtgctaccacgccggccacgtgctg
ggagctgccatgttcatgattgagatcgcaggcgtcaagcttttgtatacaggtgatttc
tcaagacaagaagatagacacttaatggcagctgaaattcctaacattaaacccgatatt
cttatcatcgaatctacttacgggacccacatccatgagaagcgagaagagcgagaagcg
agattctgcaacaccgttcatgatattgtgaacagagggggcagaggcctcatccctgtc
tttgctcttggaagggcccaggagcttctcctgattttagatgagtactggcagaatcac
ccagaactccacgacattccaatatactacgcctcctctctggccaagaagtgtatggcg
gtgtaccagacgtatgtcaacgccatgaacgacaaaatccgcaagcagatcaacatcaac
aacccctttgttttcaagcacattagtaaccttaagagcatggatcatttcgatgacatt
ggccccagcgtcgtaatggcctccccaggcatgatgcagagcggcttatccagagagctc
ttcgaaagctggtgcaccgataagaggaatggcgtcattatagccggatactgtgtggag
gggacgctcgccaagcatatcatgtctgaaccggaagaaatcactaccatgtctggacag
aagctgccgctgaagatgtctgtcgattacatctctttctctgctcacacggactaccag
caaaccagtgaattcattcgtgctttgaaaccgcctcacgtgattttagtccacggagaa
cagaacgaaatggccaggttgaaagcagccctgattcgagaatatgaagacaatgacgag
gtgcacatagaggttcacaatccccggaatacggaagcagtgaccttgaacttccggggc
gaaaaactagctaaggtcatgggctttttagcagacaaaaaaccagaacaaggccagcgg
gtctcaggaatacttgttaaaagaaattttaattatcacatcctttccccttgcgacctc
tccaattatactgacttggccatgagcaccgtgaaacagacccaagccatcccatatacc
ggtccttttaatttgctctcttaccagctccagaagttgacaggtgatgtagaagaatta
gaaattcaagaaaaacctgctttgaaagtgttcaaaaatattactgtaatacaggaacca
ggaatggtggtattagagtggttggcaaacccttccaatgatatgtatgcagatacggta
acaaccgtgatattagaagttcagtcaaacccgaaaataaggaaaggtgcagtccagaag
gtttccaaaaagttagagatgcacgtttacagcaagaggttggagatcatgctccaggac
atatttggagaggactgtgttagcgtaaaggacggatctgttcttagtgtcactgtggat
ggaaaaactgccaacataaacttggagacgcggaccgtggaatgtgaagaagggagtgaa
gacgacgagtccctccgagaaatggtggagctggctgcccagaggctgtatgaggccctc
acgccagtgccctga
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integrated database retrieval system
