Sus scrofa (pig): 100622496
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Entry
100622496 CDS
T01009
Symbol
CLASP1
Name
(RefSeq) CLIP-associating protein 1 isoform X1
KO
K16578
CLIP-associating protein 1/2
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ssc03036
]
100622496 (CLASP1)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ssc04812
]
100622496 (CLASP1)
Chromosome and associated proteins [BR:
ssc03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
100622496 (CLASP1)
Cytoskeleton proteins [BR:
ssc04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
CLIP-associating proteins
100622496 (CLASP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLASP_N
HEAT_EF3_N
HEAT_GCN1
XMAP215_CLASP_TOG
HEAT
CEP104-like_TOG
HEAT_EZ
HEAT_MROH2B_C
TOR1L1_N
TPR_CAND1
Sec7-like_HUS
Cnd1
VPS15-like_hel
HEAT_2
Ltn1_1st
TPR_DNAAF5
HEAT_DAAF5
MMS19_N
ParcG
TAN
MMS19_C
KH_DEAH11_1st
DUF5059
Motif
Other DBs
NCBI-GeneID:
100622496
NCBI-ProteinID:
XP_020930806
LinkDB
All DBs
Position
15:29782613..30042727
Genome browser
AA seq
1629 aa
AA seq
DB search
MEPRMEACLAQVLQKDVGKRLQVGQELIDYFSDKQKSADLEHDQTMLDKLVDGLATSWVN
SSNYKVALLGMDILSALVTRLQDRFKAQIGTVLPSLIDRLGDAKDSVREQDQTLLLKIMD
QAANPQYVWDRMLGGFKHKNFRTREGTCLCLVATLNASGAHTLTLSKIVPHICNLLGDPN
SQVRDAAINSLVEIYRHVGERVRADLSKKGLPQSRLNVIFTKFDEVQKSGNMVQSANDKN
FDDEDSVDGNRPSSASSTSSKAPPSSRRNVGMGTTRRLGSSTVGSKSSAAKEGAGAVDEE
DFIKAFDDVPVVQIYSSRDLEESINKIREILSDDKHDWEQRVNALKKIRSLLLAGAAEYD
NFFQHLRLLDGAFKLSAKDLRSQVVREACITLGHLSSVLGNKFDHGAEAIMPTIFNLIPN
SAKIMATSGVVAVRLIIRHTHIPRLIPVITSNCTSKSVAVRRRCFEFLDLLLQEWQTHSL
ERHISVLAETIKKGIHDADSEARIEARKCYWGFHSHFSREAEHLYHTLESSYQKALQSHL
KNSDSIASLPQSDRSSSSSQESLNRPLSAKRSPTGSTTSRASTVSTKSVSTTGSLQRSRS
DIDVNAAASAKSKVTSTPGTTPFSSAAALPPGSYASLDGTATRAEGRIRTRRQSSGSATN
VASTPSDSRGRSRAKVVSQSQRSRSANPAGAGSRSSSPGKLLGSGYSGLAGSSSRGPPVT
PSSEKRSKIPRSQGCSRETSPSRIGLARSSRIPRPSMSQGCSRDTSRESSRDTSPARGFP
PLASRRHSRSTSALATADSVGQSDRFGLGQAGRIPGSVNAMRVLSTSTDLEAAVADALLL
GDSRSKKKPVRRRYEPYGMYSDDDANSDASSVCSERSYGSRNGGIPHYLRQTEDVAEVLN
HCASSNWSERKEGLLGLQNLLKSQRTLSRVELKRLCEIFTRMFADPHSKIADSEPECEDK
GGNLFPSEGSCTRVFSMFLETLVDFIIIHKDDLQDWLFVLLTQLLKKMGADLLGSVQAKV
QKALDVTRDSFPFDQQFNILMRFIVDQTQTPNLKVKVAILKYIESLARQMDPTDFVNSSE
TRLAVSRIITWTTEPKSSDVRKRSRAGDVPARSASACSGPGGGNLEENCKQAAQIVLISL
FELNTPEFTMLLGALPKTFQDGATKLLHNHLKNSSNTSVGSPSNTIGRTPSRHTSSRTSP
LTSPTNCSHGGLSPSRLWGWSADGLSKHPPPFSQPNSIPTAPSHKTLRRSYSPSMLDYDT
ENLNSEEIYSSLRGVTEAIEKFSFRSQEDLNEPIKRDGRKDCEIVPRDGGVASPATEGRG
GSDVVAGGRTALDNKTSLLNTQPPRAFPGPRARDYSPYPYCDAISAYDKTALQEAVFDDD
MEQLRDVPIDHSDLVADLLKELSNHNERVEERKGALLELLKVTREDSLGVWEEHFKTILL
LLLETLGDKDHSIRALALRVLREILRNQPARFKNYAELTIMKTLEAHKDSHKEVVRAAEE
AASTLASSIHPEQCIKVLCPIIQTADYPINLAAIKMQTKVVERIAKESLLQLLADIIPGL
LQGYDNTESSVRKASVFCLVAIYSVIGEELKPHLAQLTGSKMKLLNLYIKRAQTTNSNSS
SSSDVSTHS
NT seq
4890 nt
NT seq
+upstream
nt +downstream
nt
atggagcctcgcatggaggcctgcctggcacaggtgctgcagaaggatgtgggaaagcgg
ctgcaggttggccaagaacttatagactacttctcagacaaacagaagtctgctgacctt
gagcatgatcagaccatgttagacaaactggtggatggactcgctacctcttgggtgaac
tctagcaattacaaggtggctcttctgggcatggacatcctatccgcgctggtcacccgg
ctgcaggatcgcttcaaggcgcagatcggcacagtgctgccaagtttaatagacagactg
ggagatgctaaagactccgtgagggagcaagaccagactctgctgctaaagatcatggat
caggctgctaatccccagtacgtgtgggaccggatgctgggaggcttcaagcacaagaat
ttccgcacccgggagggcacatgtctctgccttgtcgccacactcaatgcctctggagca
catacgttaacactaagcaagatcgtgccacatatatgtaacctacttggagatccaaac
agccaggttcgagatgcagcaataaacagcttagtggaaatttacagacatgtaggagaa
cgcgtgagggcagatctcagtaagaaaggattgccacagtcccggttgaatgtaattttt
acaaaatttgatgaagtccaaaaatctggaaacatggtacaatctgcaaatgataaaaat
tttgatgatgaagattctgtggatggtaataggccttcttctgccagttccacgtcatcc
aaggctccaccaagctctcggagaaacgttggaatggggaccacccgcaggctcggttca
tccacagttggatccaaatcttcagctgcaaaagagggagctggtgctgtggatgaggag
gatttcatcaaagcgtttgatgatgtacctgtagtgcagatttattccagccgagacctg
gaggaatccataaacaagattagagaaatactgtctgatgacaagcatgattgggagcaa
agagtaaatgctctaaaaaagattagatctctacttttggctggtgctgctgagtatgat
aacttcttccaacatttgcgtcttttggacggagcctttaagctctctgctaaggacctg
cggtctcaggtagtgcgggaggcttgtatcaccttggggcatctgtcgtcggttctcggg
aataagtttgaccatggagctgaagccattatgccaactatctttaatttaattccaaac
agtgccaaaattatggccacctctggtgtcgtagctgttaggttaatcattcggcacaca
cacatccctaggctgatacctgtcataacaagcaactgtacctccaagtctgtcgcagtt
agaaggcgctgttttgaatttttagatttactcttgcaagaatggcagacgcattcgctg
gaacggcatatatcagtattagctgagacaataaagaaagggatacatgatgccgattcc
gaggccaggatagaagcgaggaagtgttactggggcttccacagtcacttcagcagagaa
gcagagcacctgtaccacaccttggagtcctcttaccagaaggcactgcagtcccacctg
aagaactcagacagcatcgcgtctctgccacagtctgaccgctcgtcttccagctcgcag
gagagtctcaaccggccgctctctgccaaaagaagtcccacgggcagtaccacctcgaga
gcttccacagttagcaccaaatccgtgtcaacgactgggtccctgcagcggtctcggagt
gacattgacgtgaacgcggccgccagtgccaaatcgaaggtcacctcgactccgggcacc
acgcctttcagctccgcagcggccttgcctccagggtcctacgcgtccttagatggtact
gccactagagcggagggtcggatccgcacaagacggcaaagctcggggagcgccaccaac
gttgcctccacaccttccgacagccggggccgcagtcgagctaaagtggtgtcacagtct
cagcgatccagatctgctaatcctgctggtgctggcagccgatcaagttccccagggaag
ttgttgggcagcggttacagtggcctggctgggagttcctcaagaggcccgcctgtgaca
ccctcttcagaaaaacgaagcaagattcccaggagtcaggggtgtagccgggagacaagt
ccaagccgcataggattagcacggagcagccgtatccctcgacccagcatgagtcagggg
tgcagccgcgataccagccgtgagagcagccgggatacaagccctgcgcggggcttccct
ccgctcgcctctcgacgtcattccaggtccactagtgctctggccactgctgactctgtt
gggcagtcagaccgatttgggcttggccaggcaggaagaatacccggttctgtgaatgcc
atgcgggtcttgagcacaagcacagatctggaagccgctgttgcagatgctctgctgtta
ggagactccaggagcaagaagaagcctgtgcggaggcgctatgagccatatgggatgtac
tctgatgacgacgccaacagtgatgcctcgagcgtgtgctctgagcgctcgtacggctct
aggaacggcggcattccgcactacctgcggcagacagaggacgtggccgaggttctcaac
cactgtgccagctccaactggtcagagaggaaggaagggctcctgggcctgcagaacctg
ctcaagagccaaagaacgctgagtcgagtggaattgaaaaggctgtgtgagattttcacc
cggatgtttgccgaccctcacagcaagattgctgattcagaaccagaatgtgaggataaa
ggaggaaatttgtttccatcagaaggctcttgtacaagagttttcagtatgtttttggag
actcttgtggattttataataattcataaggacgacctgcaagattggctttttgttctt
ctcacacaattacttaagaaaatgggagcagatttgcttggatctgtgcaagcaaaagtt
cagaaggccctcgatgtcacaagggactcctttccatttgatcaacaatttaacatttta
atgagatttattgtggatcaaacgcaaactcctaacctcaaggtcaaggtcgcaatcctg
aagtacattgagtctcttgcaaggcagatggaccctacggattttgtaaactccagtgag
acaaggcttgctgtttctcgaatcataacctggacaacagaaccaaagagttcagacgtg
agaaagcgtagtcgagcaggtgatgtccccgctaggtcagcctcagcctgctctgggcct
ggaggaggaaacttggaagaaaattgcaaacaggcagcacaaattgtgctaatctctctg
tttgaattgaacactcccgaatttaccatgttacttggtgccttgccaaaaacattccag
gatggtgccaccaaactcctgcacaaccacctcaagaattccagtaacaccagtgtgggc
tctccgagcaacaccattggccggactccctcccgacacaccagcagcaggaccagcccc
ctgacctcacccaccaactgttcccatgggggcctgtctccaagtcggttgtggggttgg
agtgccgatgggttatcgaagcacccacctcccttttcccagcctaactccatccccacc
gctccttcccacaagactctcaggcgctcttactctcccagcatgctggactatgataca
gagaacctgaactctgaagaaatctatagttctttgcgtggagtgacagaagccattgaa
aagtttagttttcgaagccaagaggatctgaacgagcccattaaaagagatggcagaaag
gactgtgagattgtgccccgagacggcggtgtcgcctctcctgccactgagggccggggt
ggcagcgacgtggtggcaggaggtcggacagctctggacaacaagacttccctgctcaac
acgcagcccccaagagccttcccagggcctcgggctcgggactacagcccctacccctac
tgcgatgccatcagcgcctacgacaagacggcactgcaggaggccgtgttcgacgacgac
atggagcagctgcgagatgtgcccattgaccactcggacctggtggcagacctcctgaaa
gagctgtccaaccacaatgagcgagtggaggagcggaaaggcgccctgctggagctgctg
aaggtcacgcgggaggacagcctgggcgtctgggaggagcacttcaagaccatcctgctg
ctgctgctggagacgctcggagacaaagaccattccatccgagccctggcattgcgagtc
ctgagggaaattctgagaaaccagccagcgagatttaaaaactatgcggagctgaccatc
atgaagactctggaagcccacaaagactcacacaaggaggtggtgagggccgcggaggag
gccgcgtccacgctggccagttccatccacccggagcagtgcatcaaagtgctgtgtccc
atcatccagacggccgactaccccatcaacctggccgccatcaagatgcagaccaaagtc
gtggagaggatcgccaaggagtccttgctgcagcttctcgccgacatcatcccgggcctg
ctgcagggttacgacaacacggagagcagtgtgcgcaaggccagtgtgttttgcttggtg
gcaatttattccgtaatcggagaagagttgaagcctcacctggcacagctcacagggagc
aagatgaagctactcaacttatatataaagagggcccagaccacgaacagcaacagcagc
tcctcctccgatgtctccacacacagctaa
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integrated database retrieval system
