Sus scrofa (pig): 100622500
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Entry
100622500 CDS
T01009
Symbol
RIF1
Name
(RefSeq) telomere-associated protein RIF1 isoform X1
KO
K11138
telomere-associated protein RIF1
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
100622500 (RIF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssc03032
]
100622500 (RIF1)
DNA replication proteins [BR:
ssc03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
100622500 (RIF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rif1_N
HEAT_ULK4
Xpo1
GNC1_N
NICE-1
Motif
Other DBs
NCBI-GeneID:
100622500
NCBI-ProteinID:
XP_003359765
Ensembl:
ENSSSCG00000016395
UniProt:
F1SHX3
A0A8D0ZQC0
LinkDB
All DBs
Position
15:complement(769518..832036)
Genome browser
AA seq
2466 aa
AA seq
DB search
MTAPGPSHLAPLLETLEDPSASQGEQTDAYLTLTSRMTGEEGKEIIIEIEKKLPRLFKVL
KNHITSQNSELSSAALQALGFCLYNPKITSALSETIIQELLSKLNDTIKSSDKNVRTRAL
WVISKQTFPPEVLGKVVSSIIDSLEIVYNRGEMHSAVVDYEALNVIIRLIEQAPIQMGEE
SIRWAKVVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEIASITEQLMTTKLLSELQKL
FMSKNETYVLKLWPLFVKLLGKTLHRSGSFINSLLQLEELGFRSGAPMIKKIAFIAWKSL
IDNFALNPEILCSAKRLKLLMQPLSSIHVRTEALALTKLEVWWYLLMRLGPHLPANFEQV
CVPLIQSTISIDSNASPQGSSSRVATSPGLNPMTPVHKGASPVTPRMNLSSNFGGMATIP
SIQLLGLEMLLHFLLGPEALSFAKQNKLILSLEPLEHPLISSSSFFSKHANTLITAVHDS
FVAVGKDASDAVIGAIWKELISLVKSVVESGNRKERPGSEVLTLLLKCLESIVKSEVFPV
SKMLVLMEITIKGLPQKVLGSPAYQVANMDILNGTPALFLIQLIFNNNLECGVEDERFFL
SLETLVGCVLSGPTSPLAFSDSVLNVINQNAKQLENKEHLWRMWSIIVTPLTELINQTNE
VNQGDALEHNFSAIYGALTLPINHIFSAQKIPVATMKTLLKTWSELYRAFARCAALVATA
EENLCCEELSSKIMSSLEDEGLSNLLFLDRIIHIVTVMVDCIDFSPYNIKYQPKIKSPQR
PSDWSKKKKEPLGKLASLFKLIVRVIYSFHTLSLKEVHCDTLLIIGNSIISILSNVLGHI
SLPSMIRKIFATLTKPLVLFYENSKFDEVPKVYTCMNTKLEKLLGEIIACLHISYTGTYD
SELLEQISPLLCVIFSHKNKQIRKQSAQFWNATFAKVAMLIYPEELKPVLRQAKQKSLLL
LPGLENVEIMEESSGPYSDTTENSQLNMKISGMERKSSGKRDSFLAQTKDAKESMKPVAK
SKLESSTPKSKSEMLLEEEMSTDFVFIPPEGKETKERILTEHQKEVLKAKRCDIPAMYNN
LDVSQDTLFSQYSQEESMEIPTLTEKSKEDSKMIFKEEQKESDTVIPQLVVENRGMDEHL
EKATFSNNENGSVEETSSEILSSNEDARGKTLVIRKKTTTECASSTENTVVVSSNSVSNV
TIPGNPPQPTSRRQSFITLEKFDGSENRPFSPSPLNNMSSTVTVKNSQEGTTKTDNPSKA
KKVVLLQSDSEKIVHGIKRSGRKSSRSEPTGNKKSKPLMRSDQEKSTRESFDGMVALENN
PPGLLNETECVLDHQVHLSESAVEYGDTTLKPTVENAVLLESSTVEDKSLEINLESKENT
PPAITTADQTVNEDSHVQVTSNQKTLRRSLRRRSETTEPATDSQDKENNHQKRERRKEEE
KTLQKSPLHVKDDVLPKQKLMSEQTVQENLIEKGSNLHEKTLGETSADVEIDENRRKPDL
EDTKSEGGGTQDVTDKSSEKPVRGRTRYQTRRASQGLLSSIENSESDSSEAKEEGSKKKR
SGKWKNKSSDSVDIEDQEEKMVRQESIKVENQTHDYEMNSEVDKDIKSQICEKDDIDIIT
LQDSTVSSDLFQVSDDVSNEGKSKTYRCAEHSFSNPPVPESNLRTRNANKRLQKRDSIEN
SVGESSKTGTSDISLLSEKTLQTLECQHKRSRRVRRSKGCDCCGEKSQPQEKSFIGLKNT
ENFDVKVSETKADVQTPVTISEPSKADLHSEVKLSDEHHSVNFHLDLKEENDTINDSSVI
SESEFKENIQDSFPSEMVNLNEETCDRTTEEAVSLESQEPSNKRCKTLGPCLDDSKDTSL
ECFTLETKEEKPAEATPEKELSVENIVNAEENECKVKELNQEVDDAMELEVESDKSEVSF
FEQKSDISKEGLMEEISEGKDTSEAHVAEEMNADEAVTEEFNSDVGHSDSTTSVKVRTQM
EFSEQIAVGKLDRGSDESDPGSSEEMNAETENCAETVIGEVTAETDHISETEDEDFTSKA
SKPVEAETKGLNVEMDSFVPDTLEMSTEEGKVDPRKTETNVELNKFDKTELDDNHMVVRN
DGILQEVHHTSEKVEETPQSLTSETAVSELIPEDNNTSPQKLKDLDPLLMSTNDSPSGMQ
TRCVWSPLASPSTSILKRGLKRPQEDEISSPVHKVRRVSFADPIYQAGLADDIDRRCSII
RCHSSNSSSMVKSAKTSPTAHSKHNTTSTKGFLSPGSRSPKFKSSKKCLIAEMAKESVPC
PTESVYPALVNCAAPVDIILPQITSNMWARGLGQLIRAKNIKTIGDLSTLTASEIKTLPI
RSPKVSNVKKALRVYHEQQVKSRGLEEIPVFDISEKTINGMENKSVSPDEERLASDLIDP
VALETPLSKNLVAQISALALQLDSEDLHNYSGSQLFEMHEKLGSMANCIIKNLQSRWRSP
AHENSI
NT seq
7401 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccccgggtccgagccacctggcgccgctgttggagactctggaagacccttcc
gcctcccaaggagagcagaccgacgcttacctgactctgaccagtcgtatgactggagaa
gagggaaaagaaatcattatagaaattgagaaaaaacttcctcggctcttcaaagtttta
aagaatcacataaccagtcaaaactcagagctcagtagtgctgctctacaggccttgggg
ttttgcttatataatcctaaaattacatcagcattatcagagacaattattcaagaactg
ctttcaaaactgaatgatactattaagagttcagataaaaatgttcgtactagggcactt
tgggtgatatccaagcagacgtttccccctgaagttcttggcaaagtagtgtccagtata
attgattcattagaaatagtatataatagaggagagatgcattctgctgttgttgattat
gaagcattaaatgtcatcataaggctaattgaacaagccccaattcaaatgggggaagag
tcaattaggtgggcaaaagtggtcatacctttagtggttcattcggctcaaaaggtacat
ttacggggagctactgctctagagatggggatgccattgttgcttcagaaacagcaagaa
atagcatctatcacagagcagctcatgactactaaattactttcagaactccagaagcta
tttatgagtaaaaatgagacgtatgtgttaaaattatggcctttgtttgtcaagcttctt
gggaagaccttgcatcgaagtgggagtttcataaattctctgttacagctagaagaactg
ggatttcgtagtggagcacccatgattaaaaaaatagcttttattgcttggaagagttta
atagataattttgctctaaatccagaaatactatgtagtgcaaaaagactgaagttgtta
atgcaacctttgagttctatccatgtgagaacagaagctctagcactgacaaaactagaa
gtctggtggtatctattgatgagactaggacctcaccttcctgctaattttgaacaggtt
tgtgtgcctctgattcaaagcacaataagcatcgattctaatgcttcacctcaaggcagt
tcatctcgtgtagctacttctccaggtttaaatcctatgactcctgtacacaaaggtgct
tctcctgtaactcctcggatgaatttgagttcgaattttggtggaatggcaacgatcccc
tctattcaacttttgggacttgaaatgttgcttcattttttattaggtccagaagccttg
agttttgctaagcaaaacaaacttatactgagcttagagccacttgaacatccattaatc
agcagctcttcttttttttccaaacatgctaatacacttatcaccgctgttcatgatagt
tttgttgcagttgggaaagatgcttctgatgcagttattggtgctatttggaaagagcta
attagcttggtgaagtcagttgttgaatcaggtaacagaaaagagaggcccggttctgaa
gttttgaccctcttattaaaatgtctagaaagtatagtgaagtcagaagtatttcctgta
tcaaaaatgctggtcctcatggaaattacaattaaaggacttcctcagaaagtattaggt
tctccagcatatcaggttgctaatatggatattcttaatggaactcctgctttgttctta
attcagttaattttcaataataatctggaatgtggtgtagaagatgaaaggttttttctc
agcctggaaactcttgtaggttgtgttctttctggtccaacttcaccactagctttcagc
gactccgtcttaaatgttattaaccaaaatgcaaagcagttggaaaacaaggagcatctt
tggagaatgtggagtattatagtcaccccattaaccgaattgattaatcagaccaatgaa
gtgaatcaaggtgatgccttagaacataattttagtgccatctatggtgcattgacctta
ccaataaaccatattttttcagcacaaaaaattccagtggccaccatgaagaccttactt
aaaacttggtcagaattatatagagcatttgctcgctgtgcagctttggtggcaactgca
gaagagaatttgtgctgtgaggaactttcttctaagataatgtccagtttggaagatgaa
ggcctttcaaatttgttgttcttggataggatcattcatattgttactgttatggttgat
tgcatcgacttttcaccgtataatattaaatatcagcccaaaatcaaatcgccacagaga
ccttcagattggtccaaaaagaagaaggagcccctgggaaaattggcttctttatttaaa
cttattgtaagagtgatctactctttccacactctgagcctcaaggaagtacattgtgat
actctcctcattatcggcaactcaatcatcagcattctttccaatgtacttggacatatt
tctttgccttctatgatccgaaaaatatttgcaactttaacaaaaccactggtgttattt
tatgaaaactcaaagtttgatgaagtccctaaagtgtatacttgtatgaacaccaagtta
gaaaagctactaggagaaattattgcttgcctacacatcagctacactggaacttatgac
agtgaacttcttgaacagatctcgccattgttatgtgtaatattttcacacaagaataaa
cagattagaaaacaaagtgctcagttctggaatgccacatttgctaaagtcgcaatgttg
atttatcctgaggagttaaaaccagtactaaggcaagccaaacagaaatctctgcttcta
ttgcctggattggaaaatgttgaaattatggaagaatccagtggaccatattcagataca
acagaaaattcacaattaaatatgaagataagtggtatggaaagaaaatcaagtggaaaa
agagattcttttttggcacaaacgaaggatgcaaaagaaagtatgaaaccagtagctaaa
tcgaaactagaatcttcaactccaaaatcaaagagtgaaatgcttttggaagaagaaatg
tctactgacttcgtgtttatacctccagaaggaaaagaaacaaaggaaagaatactaact
gaacaccagaaagaagtactcaaagcaaagaggtgtgatattcctgccatgtataataat
ctggatgtttcacaagatactttattttctcaatatagtcaggaagaatctatggaaatt
cctactctaactgaaaaatcaaaggaagactccaagatgatatttaaggaggagcaaaag
gagagtgacactgtcattcctcaacttgttgtggaaaaccgtggcatggatgaacatctt
gaaaaggccaccttttcgaataatgagaatggttctgttgaggaaactagttcagaaata
ctgagcagtaatgaagatgccagaggaaagactttagttatacggaagaaaacaacaact
gaatgtgcatctagtacagaaaatactgttgttgtcagcagtaactcagtttctaatgtc
accattcctggaaatcccccacagcccacaagtcgaagacagtcctttattactttggag
aagtttgatggttcagaaaatagaccttttagtccatccccattaaataatatgtcatca
actgttacagtgaaaaatagccaggaaggcacaactaagacagataatccatcaaaagca
aagaaagtggttcttttacaatctgactctgaaaaaatagtgcatgggattaagagatca
ggccgaaaatcaagtaggtctgaaccaacagggaataaaaaatctaagcccttaatgaga
tctgatcaggagaaaagtactcgggaatcctttgatggcatggtagccttagaaaataat
ccacctggtttgcttaatgaaacagaatgtgtgttagatcatcaggttcatctctctgaa
tctgcagtggagtatggggatacaacgcttaagccaacagtagaaaatgccgtattatta
gaaagcagtactgtagaagacaaaagcttagaaattaatttggaatccaaagaaaataca
cccccagcaataacaacagcagatcaaacagtaaatgaggatagtcatgttcaggtaact
tcaaatcaaaaaacgcttaggcgatctttaaggagacgttcagaaacaacagagccagcc
actgatagccaagataaagaaaataatcatcaaaaaagggagagacgaaaggaagaagaa
aagactctgcagaagagtccattgcatgtgaaagatgatgttttacctaagcaaaaactg
atgtctgaacaaactgtacaggaaaatttaattgagaaaggaagtaatttacatgagaag
actttaggggaaactagtgctgatgttgaaattgatgaaaatagaagaaagccagacctt
gaggatactaaatctgagggaggtggtacccaggacgttacagacaaatcctctgagaaa
ccagtaagaggccgaacacggtatcaaacaagaagagcatcacagggtttactctccagt
attgagaattcagaatctgacagttcagaggcaaaagaagaaggctctaaaaagaaaaga
tctggaaaatggaaaaacaaaagcagcgacagcgtcgacattgaagatcaagaagagaaa
atggtaagacaggaatctataaaagtggaaaatcagacccatgattatgaaatgaattcc
gaagtagacaaagatataaaatctcagatctgtgaaaaagatgacattgatattataact
cttcaagattctacagtatcttcagatttatttcaagtttctgatgatgtatcaaatgag
ggaaaaagtaaaacttacagatgtgcagagcattccttttcaaatcctcctgtaccagaa
tcaaatctaaggactagaaatgccaataagagattacaaaagcgagattctatagaaaat
agtgtgggggaatcctcaaaaacagggacatcagatatttctttgctttctgaaaaaact
ctccaaacacttgaatgtcaacataagagaagtaggagggtgcggagatctaaaggttgt
gattgctgtggagaaaaatcacaacctcaggaaaagtcattcattgggttaaagaataca
gaaaattttgatgtgaaggtcagtgaaacaaaggcagatgtgcagacccctgtaactata
tcagaaccttctaaagctgatctgcactctgaggtaaaactttcagatgagcatcatagt
gtgaattttcatttggatctcaaggaggagaatgatactattaatgattcttcagttatt
tctgaaagtgagtttaaagaaaatattcaagactcttttccttctgaaatggtaaatctt
aatgaagaaacttgtgataggactactgaggaagcagtgtctcttgaaagccaggaacca
tctaataaaagatgtaaaactcttggtccatgtttagatgattccaaagatacttcactg
gaatgttttactttggagaccaaagaagaaaagccagcagaggctaccccagaaaaggaa
ttgagtgtagagaacattgttaatgctgaagaaaatgaatgtaaagtaaaagaattgaat
caagaagtagatgatgctatggaattggaggtagaaagtgataaatctgaggttagcttc
tttgaacaaaaaagtgatatttcaaaggaagggctaatggaggaaatcagtgaaggaaag
gacacctctgaagcacatgtagctgaggaaatgaatgctgacgaagcagtaactgaggaa
tttaattcagatgtgggtcactctgatagtaccacatctgtgaaagtgagaactcagatg
gagttttctgaacagatagcagttgggaaactagacagaggaagtgatgaatctgaccca
ggctcatcggaagaaatgaatgctgaaacggaaaattgtgcagaaacagtgattggtgag
gtgactgctgaaactgaccacatcagtgaaacagaggatgaggacttcacttccaaagcc
tctaagcctgtagaagccgaaacaaaggggttgaatgtggaaatggacagctttgttcct
gacacactagagatgagcactgaagaagggaaagttgaccctcgtaaaactgaaacaaat
gttgaacttaataaatttgacaaaaccgaattagatgacaatcacatggtagtgagaaat
gatggaattttacaggaagttcaccatacttcagagaaagtggaggagacaccacaatct
ctgacttctgaaacagctgtctctgaactgataccagaagataataatacatctcctcag
aaattaaaggatcttgatcctttactcatgtcaacaaatgacagtcctagtggcatgcag
acacgctgtgtctggtcccctttggcttctccatccaccagcattttaaagagaggacta
aaaagaccccaagaagatgagatctcatcacctgttcataaggttcgccgtgtctccttt
gcagatccaatataccaagcaggattggcagatgacattgataggcgatgctctattata
aggtgccattcttcaaatagttcttccatggtaaaaagtgctaaaacttcacccactgca
cattctaagcataataccacttcaaccaaaggatttctgtccccaggatcacgtagccct
aaatttaagagctcaaagaagtgtttaattgcagaaatggctaaggaatctgtgccatgc
cccacagaaagtgtttaccctgccttggtgaactgtgcagcaccagttgacatcatttta
ccgcagattacgtccaacatgtgggcaagaggactgggacaactcattagagccaagaat
ataaaaacaattggtgatttgagtactcttacagcatctgaaataaaaactctccctatc
cgttctccaaaagtgtctaatgtaaaaaaggcactcagagtatatcatgagcagcaggtg
aagtctcgtggactagaagagattccagtttttgatatttctgaaaaaacaataaatgga
atggaaaataaatctgtttctcctgatgaagaaagacttgcctcagatttaattgatcct
gttgctttagaaactccattatctaaaaaccttgtggcacagattagtgcactcgctctt
cagctggattcagaagatctccataattattcaggaagtcagttattcgaaatgcatgag
aaacttggtagcatggcaaactgtataattaaaaatcttcagtcacgttggaggtcacca
gcccatgaaaattctatttag
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integrated database retrieval system
