Sus scrofa (pig): 100622699
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Entry
100622699 CDS
T01009
Symbol
RB1CC1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04140
Autophagy - animal
ssc04211
Longevity regulating pathway
ssc05010
Alzheimer disease
ssc05014
Amyotrophic lateral sclerosis
ssc05016
Huntington disease
ssc05017
Spinocerebellar ataxia
ssc05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100622699 (RB1CC1)
09150 Organismal Systems
09149 Aging
04211 Longevity regulating pathway
100622699 (RB1CC1)
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
100622699 (RB1CC1)
05014 Amyotrophic lateral sclerosis
100622699 (RB1CC1)
05016 Huntington disease
100622699 (RB1CC1)
05017 Spinocerebellar ataxia
100622699 (RB1CC1)
05022 Pathways of neurodegeneration - multiple diseases
100622699 (RB1CC1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ssc01009
]
100622699 (RB1CC1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssc04131
]
100622699 (RB1CC1)
03029 Mitochondrial biogenesis [BR:
ssc03029
]
100622699 (RB1CC1)
Protein phosphatases and associated proteins [BR:
ssc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100622699 (RB1CC1)
Membrane trafficking [BR:
ssc04131
]
Autophagy
Autophagosome formation proteins
ULK complex
100622699 (RB1CC1)
Mitochondrial biogenesis [BR:
ssc03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
100622699 (RB1CC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
Motif
Other DBs
NCBI-GeneID:
100622699
NCBI-ProteinID:
XP_020945029
Ensembl:
ENSSSCG00000028902
UniProt:
A0A4X1T9T1
A0A480UJQ8
LinkDB
All DBs
Position
4:77593204..77649551
Genome browser
AA seq
1596 aa
AA seq
DB search
MKLYVFLVNTGTTLTFDTELTVQTVADLKHAIHSKYKIAAQHQVLVVNGGECMAADRRVC
TYSAGTDTNPIFLFNKEMILSERLPAIPKTTFSTENDMEIKVEESLMMPAVFHTVASRTQ
LAVEMYEVAKKLCSFCEGLVHDEHLQHQGWAAIMANLEDCSNSYQKLLFKFESIYSNYLQ
SVEDIKLKLTHLGTAVSVMAKIPLLECLTRHSYRECLGRLDSLPEHEGSEEAETKTSADL
VLSPEMPATPIKPLSTSCLKAAEHVAPEATDAESGKEIRESGQNTAQLDETSVDAKDGDL
PFFNVSLLDWINVQDRPNDVESLVRKCFDSMSRLDPRIIRPFIAECRQTIANLDNQNMKA
IKGLEDRLYALDQMIASCGRLVNEQKELAQGFLANQMRAENLKDASVLPDLCLSHANQLM
IMLQNHRKLLDIKQKCTTAKQELANNLHVRLKWCCFVMLHADQDGEKLQALLRLVMELLE
RVRIVEALSTVPQMYCLAVVEVVRRKMFIQHYREWAGALVRDGKRLYEAEKSKRESFGKL
FRKSFLRNRLFRGLDSWPPSFCTQKPRKFDCELPDISLKDLQFLQSFCPSEVQPFLRVPL
LCDFEPLHQHALALHNLVKAAQSLDEMSQTITDLLSEQKASVSQTTPQSASSPRVESATG
MTTTTSPRTPPPLDVQDPLCPAVCPLEELSPDSIDAHTFDFETIPHPNIEQTLHQASLDL
DSLAESPESDFMSAVNEFVIEENLSSPNPISDPQSPEMMVESLYSSVINAIDSRRMQDTN
TCGQEDAGGRASLSVQLEKCRVTAHDSHLSIQTIKEDLCHFRTFVQKEQGDFSNSLKCTA
VEIRNIIEKVKHSLEITLNENHQRELQSLKSDYEGRLAALVKESEESENRITQLKGDLAC
LEEVLQNKDNEFALVKHEKEVVVGLQNEKDQKLLAMEGLLRTQHGEIEGLKQSREMALED
LERLREEHEARMQLLRAELQRSEQSHLKELEDTLQARHTQELERSLADHRVCLEKLEKEN
QQRLEQVQNSHAAVIQEREQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKLLLEES
RAQQKETLKSLLEQETEYLRSEISKLNQKIQDHNEHYQVGLAELRTLMTIEKDECISELI
TRHEGESTMLRAELSKVTSLHHHALEIEKSLREELAELQRKLDSELSALEKQKDEKIIQQ
EEKYEAIIQKLEKDKEEFVIRQEQDRELLIQKLNCEKAKAADIEAALKEFNLEREAVEKE
LLERVKHLESQIAESHAIESAREDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQN
VRTSLIAEQQTNFNTVLTREKMRKENIINDLSDKLKSTMQQQERDKDLIESLSADRARLL
EEKKRLEEEVGRLRGAGPVPSPSAVAPELYGACAAAEPPGEAERPLLPEAPDEGRADPAL
ETSTMSVQENVHMLSEEKQRIMLLERTLQLKEEENKRLNQRLMSQSLSSVSPRHSEKIAI
RDFQVGDLVLIILDERHDNYVLFTVSPTLYFLHSESLPALDLKPGEGASGASRRPWVLGK
VMEKEYCQAKKAQNRFKVPLGTKFYRVKAVSWNKKV
NT seq
4791 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgtttctggttaacactgggaccaccctgacatttgacactgaactt
acagtgcaaactgtggcggacctcaagcatgccatccatagcaagtacaagattgcggcc
cagcaccaggtgctcgtggtcaacggaggggagtgcatggctgccgatcggagggtgtgc
acctacagcgctgggacggatacaaatccaatttttctttttaacaaagaaatgatctta
tctgaacgtctacctgctattcctaaaactaccttttcaacagaaaatgacatggaaata
aaagttgaagagtcccttatgatgcctgcagtttttcacactgtcgcttcaaggacacaa
cttgcagtggaaatgtatgaagttgccaagaaactttgctctttctgtgaaggtctggtc
catgatgaacatcttcaacatcaaggctgggctgcaatcatggccaatctggaggattgc
tcaaattcataccaaaagctgcttttcaaatttgaaagtatttattcaaattatctgcag
tctgtagaagacatcaagttgaaacttactcatttaggaactgcagtttcagtgatggcc
aagattccgctgttggagtgcctgaccagacacagctatagagagtgtttgggaagattg
gattccctgcctgaacacgaaggctcagaagaggcggagacgaagacttctgctgacctg
gtgctgtctcctgagatgcctgcaacaccgatcaaacccttgtcaacctcgtgtctgaag
gcagcggaacatgtagccccagaagccacggatgctgaaagtggaaaagaaattagggag
tctggtcaaaatactgcccagctggacgaaacttcagtagatgctaaagacggcgatctg
ccttttttcaatgtttctctgttagactggatcaatgttcaggacaggcctaatgatgtg
gaatccttggtcaggaaatgctttgattccatgagcaggcttgatccacggattattcga
ccctttatagcagaatgtcgtcaaactatcgccaatctcgataatcagaacatgaaagcc
atcaaagggctggaagaccggctgtacgccctggaccagatgatcgccagctgtgggcga
ctcgtcaacgaacagaaagagctcgctcagggatttttagctaaccagatgagagctgaa
aacttgaaggatgcatctgtattacctgatttgtgcctgagtcatgcaaatcagttgatg
attatgttgcaaaatcatagaaaactgttggatattaaacagaagtgtaccactgccaaa
caagaactagcaaataaccttcatgtcagactgaagtggtgttgctttgtgatgcttcac
gctgatcaggacggggagaagttgcaggctttgctccgcctggttatggagctcttggaa
agagtcaggattgttgaggctctgagtacagtccctcagatgtactgcctcgctgttgtg
gaggtggtcaggaggaaaatgttcattcaacactacagggagtgggctggtgctttagtc
agagacgggaagcgattatatgaggccgaaaagtcaaaaagggaatcctttgggaaatta
tttaggaagtcttttttgagaaatcgtctctttaggggcttggactcctggcccccgtcc
ttttgtacacagaagcctagaaagtttgactgtgaacttccagatatttcattaaaagat
ttacagtttctgcaatcattttgtccttctgaagttcagccgtttctcagggtgccctta
ctttgtgactttgaacctctgcaccagcacgcacttgctctgcataacttggtgaaggca
gcacaaagtttggatgagatgtcgcagaccattacagatctactgagtgaacaaaaggcg
tccgtgagtcagacgaccccccagtcggcctcctcgccccgggtagaaagtgcgacagga
atgacaactactacctcacccagaactcctccgccactcgatgttcaggaccccttatgt
cctgcagtctgtcccttagaagagctgtccccagatagcatcgatgcacatacatttgat
tttgaaaccatcccccacccaaacatagagcaaactcttcaccaagcttcattagacttg
gattccttagcagagagtcccgaatcggattttatgtctgctgtgaatgagtttgtaata
gaagaaaatctatcatctcccaatcctatcagtgatcctcaaagtccagaaatgatggtg
gagtctctttactcatcagtcatcaatgcgatagacagcaggcggatgcaggatacaaat
acgtgtggtcaggaggacgcgggcggccgggcgtctctcagcgtccagctggagaagtgc
cgagtcactgcccacgactcgcacctcagtatacaaaccatcaaggaggacctttgccac
ttccgcacatttgtacagaaagaacagggtgatttctcaaattcgttaaagtgtacagca
gttgaaataagaaacattattgaaaaggtaaaacattctttggaaataacactaaatgaa
aaccatcaaagagagctacagtctttaaaaagtgactatgaaggcagacttgctgccctg
gtaaaggagagtgaagaaagtgaaaacagaatcacacagctgaaaggagacttagcatgc
cttgaggaggttttacaaaataaagataacgaattcgctttggttaaacacgagaaagaa
gtggtggtcggcctgcagaatgagaaggatcagaagctgctggcgatggaagggctcctg
cgcacgcagcatggtgagatcgaggggctgaagcagtcccgggagatggcgctggaggac
ttagagaggctgcgcgaggagcatgaggccaggatgcagctgctgagggcggagctccag
cgctcggagcagagccacctgaaggagctggaggacacgctgcaggccaggcacactcag
gagctggagaggtccctggccgaccacagggtgtgccttgagaagctggagaaggagaac
cagcagagactggagcaggtgcaaaactctcatgctgcagtcatccaggagagagaacag
cagcttcaggagttaaaactcaaggtttctgatttgtcggacatgaggtgtaagttagag
gttgagcttgccttgaaggaagcagaaactgacgaaataaaactattgctggaggaaagc
agagcccaacagaaggagaccctgaaatctctccttgaacaagagacagaatacttgaga
tcagagataagtaaactaaaccagaagattcaagatcataatgaacattatcaggtgggc
ttggcagagctgagaactttgatgacaattgaaaaggatgagtgcatttcagagttaatc
actaggcacgaaggggaatctactatgctgagagcagaattgagcaaagtgacgtcattg
catcaccatgcattggaaatagaaaaaagcctgagagaagagttagctgaactgcagagg
aagttggactcagaactgagtgctcttgaaaaacaaaaagatgagaaaatcatccaacaa
gaggagaagtacgaagctatcatccagaagcttgagaaagacaaagaggagtttgtcatt
cgacaggaacaggatagagaactgctaattcagaagcttaattgcgaaaaggcaaaagca
gcagacattgaggctgccctgaaagaatttaacttggaaagagaagctgttgagaaagag
ttattagaaagagttaaacatcttgagagtcaaatagcagaaagtcatgccattgaatct
gccagagaagattcttcaagcctagttgctgaacttcaagaaaagctccaggaagaaaaa
gctaagtttctagaacagctagaagagcaagagaagaggaagaatgaagaaatgcagaat
gttcgaacatctttgattgctgagcaacagaccaactttaacactgttttaacgagagag
aaaatgagaaaagaaaacataatcaatgatctcagcgataagctgaaaagcacgatgcag
cagcaagagcgggacaaagatctgatcgagtcgctgtcggcggaccgggcgcggttgctg
gaggagaagaagcggctggaggaggaggttggccggctacggggcgctggcccggtgccc
tccccgagcgcggtagccccggagctttatggagcctgcgccgccgcggagcccccggga
gaggcggagaggccgctgctgcctgaggcccccgacgaggggagggcagacccagccttg
gagaccagcaccatgtccgtgcaagaaaacgtccatatgctctctgaagaaaaacaaagg
ataatgctgctggaacgaacactacagttgaaagaagaagaaaacaagcggttgaatcag
agactgatgtcccagagcctgtcctccgtctccccgcggcactctgagaagatcgccatc
agagattttcaggtgggcgacctggtccttatcatcctggacgagcgccacgacaactac
gtgctctttaccgtgagccccaccttgtacttcctgcattcggagtctctgcctgccctg
gacctcaaaccaggtgagggggcttcaggtgcgtctagaagaccgtgggtccttggaaaa
gtgatggagaaggagtactgtcaggccaaaaaggcacaaaacagatttaaagttcctttg
gggacaaagttttacagagtgaaagctgtgtcgtggaataagaaagtataa
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integrated database retrieval system
