Sus scrofa (pig): 100623100
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Entry
100623100 CDS
T01009
Symbol
SCARF1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
100623100 (SCARF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssc04131
]
100623100 (SCARF1)
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ssc04990
]
100623100 (SCARF1)
Membrane trafficking [BR:
ssc04131
]
Endocytosis
Phagocytosis
Scavenger receptors
100623100 (SCARF1)
Domain-containing proteins not elsewhere classified [BR:
ssc04990
]
Laminin domain-containing proteins
Laminin EGF-like domain-containing proteins
100623100 (SCARF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_EGF
EGF_2
C8A_B_C6_EGF-like
Motif
Other DBs
NCBI-GeneID:
100623100
NCBI-ProteinID:
XP_003358240
Ensembl:
ENSSSCG00000024071
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All DBs
Position
12:complement(47844732..47860443)
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AA seq
869 aa
AA seq
DB search
MAARPSGLVSSGKALGGSREGVGSCGGQTGLNPPAAPAAMGPRLLFPLLLLWTWGTRGSE
LDPNGLHVCVASSPSAELQCCPGWRQKDQECTIPICEGLDACGQDEVCVKPGLCRCKPGF
FGAQCNSRCPGQYWGPDCRETCTCHPHGQCEPATGVCRCQPDRWGSRCEFPCACGPHGRC
DPETGACHCEPGWWSSTCRRPCQCNPAAARCDPATGSCLCEPGWWGRRCSFRCPCHGSPC
AQESGRCACRPGWWGPECRQPCECVRGRCSAASGQCICPPGFRGARCELPCAPGRYGPQC
RDSCGHCKQNEPCSADTGRCESCEPGWNGTQCHQPCPPGTFGESCRQQCPHCRLGEACQP
DTGHCQSCDPGRLGLRCEDPCPTGTFGEDCGSTCPTCVQGACDAVTGECVCNTGYWGPSC
NISCPSGFHGNNCSLPCECPEGTCHPVSGACQLGSRGQDAALIAGILVPLLLLLLAVACC
ACCCWAARLDPKDRPAGDGTAMSRMKLQVWGALTSSLGSALPCASLSSHKLPWVTVSHHD
PEIPFNHSFIEPPSAGWVSDDSFSSDPESGEEEGPAYCVPPQEGMVPVAQAESPEAGLAG
GAFPPPEDASTPFAIPRTSSLARAKRPSVSFAEGTKFAPQSRRSSGELSSPLRKPKRLSR
GGQLGPESQEPEEATGPEQTETDGAPPGALGSRDSAIGRHRLPLGGRTVAERVEAIEGSV
QQSAGSVTTIYMLAGTPRGSEGPVRSVLRRFGSFQKGQAEPRVKSAIPKPPRRALSRNKG
STGLASGSASPSSGSAPNEEVTRASASAGTGPEEVAGGLGDGIESSGRGQELAPESGRLD
QGPQKPADEGSREEPQYENVAPISGPPEP
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atggcagcccgcccctccggcctggtttcctcaggaaaagccttgggaggaagcagggag
ggggttgggagctgtgggggccagactgggctgaaccctccagctgcaccggctgccatg
gggccgaggctgttgttccctctgctgctgctctggacctgggggacccgggggtctgag
ctggaccccaatgggctgcacgtctgcgtggccagcagcccctctgctgagctccagtgc
tgcccaggctggaggcagaaagatcaagaatgcaccatccccatctgcgaggggctggat
gcctgcgggcaagacgaggtatgtgtgaaaccaggcctctgtcgatgcaaacctggattc
ttcggggcccagtgcaactcccgctgccctggccagtactggggccccgactgccgggag
acctgcacctgccacccgcacggccagtgcgagccagccacgggcgtgtgccgctgccaa
cccgaccgctggggcagccgctgcgagttcccgtgcgcctgcggcccgcacgggcgttgc
gaccccgagacaggcgcgtgtcactgcgaacccggctggtggtcgtccacgtgccgccgc
ccgtgccagtgcaacccggcggccgcgcgctgcgatccggccaccggttcctgcctatgc
gagcccggctggtggggccgccgctgcagcttccgctgcccctgccacggctcgccgtgc
gcacaggagtcgggccgctgcgcctgccggccgggctggtggggccctgagtgccggcaa
ccgtgcgagtgcgtgcgcggccgctgcagcgccgcctccggccagtgcatctgcccgccc
ggcttccgcggagcgcgctgcgagctgccctgcgcccctggccgctacgggccgcagtgc
cgcgacagctgtggccactgcaagcagaatgagccgtgctctgcagacacaggcaggtgt
gagtcctgcgagcccggctggaatgggactcagtgccaccagccctgccctcctggtacc
tttggtgagagctgcaggcagcagtgcccccactgtcggcttggggaggcctgtcagcca
gacaccgggcactgtcagagctgtgaccctggccggctggggctcaggtgcgaagacccc
tgcccaactggcacctttggggaggactgtggctctacctgccccacctgtgtccagggg
gcctgtgatgctgtgactggggagtgtgtctgcaacaccggctactgggggcccagctgc
aacatttcgtgcccatctggcttccatggaaacaactgctctcttccctgtgaatgtcca
gagggaacctgccaccctgtctctggggcctgccagctgggatctcgcggccaggatgcc
gccctcatcgcgggcatccttgtgcctctgctgctgctcctcctggccgtcgcctgctgt
gcctgctgctgctgggctgcccggttggaccccaaggacaggccagcgggagacggaact
gctatgtccaggatgaagctgcaggtctggggggcactgacttccagcctgggctctgcc
ctgccctgcgcgtccctcagcagccacaagcttccctgggtgacagtctcgcaccacgat
ccggagatcccgttcaaccacagcttcatagagccgccttctgcgggctgggtctccgac
gactccttctcttcggatcccgagtctggtgaggaggagggtcctgcctactgcgtgcca
ccccaagaagggatggtccctgtggcccaagcggagtcacccgaggccggcctggccgga
ggtgccttccctccccccgaggatgcctccacgcccttcgccatcccgcgcacgtccagc
ctagctcgggccaagcggccctcggtctcctttgctgaagggaccaagtttgcaccgcag
agtcgccgaagctccggggagctctccagcccgctccgaaagcctaagaggctctcccgg
gggggccaactaggtcccgaaagccaggagcccgaagaggccacaggcccagagcaaacg
gaaacggacggggccccgcctggtgctcttggctccagggattcagccattggccgccac
cggctcccgcttggtggccggacggtggctgagcgtgtggaagccatcgagggcagtgtc
cagcaaagcgcagggtctgtgaccacaatctacatgctggcagggacaccccggggatct
gagggtcctgtccggtctgtcctccgccgttttggtagcttccagaaaggccaggcagag
cccagggtcaagagcgccattcctaagcctccacgcagggccctgagtcggaataagggc
agcactgggctggcctctggctctgccagtccgagctcgggctcagccccaaatgaggag
gtgaccagggcctcggcatctgcagggactgggccagaggaagtggccggggggctgggg
gatggcatcgagagctcagggaggggccaggagctggcccctgagagtggccgcctagac
cagggtccccagaagccggcagacgagggaagccgggaggagccccagtatgagaatgtc
gcacccatctctgggccaccggagccctga
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