Sus scrofa (pig): 100623280
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Entry
100623280 CDS
T01009
Symbol
PTCH2
Name
(RefSeq) protein patched homolog 2 isoform X1
KO
K11101
patched 2
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04340
Hedgehog signaling pathway
ssc05200
Pathways in cancer
ssc05217
Basal cell carcinoma
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
100623280 (PTCH2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100623280 (PTCH2)
09162 Cancer: specific types
05217 Basal cell carcinoma
100623280 (PTCH2)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
MMPL
Motif
Other DBs
NCBI-GeneID:
100623280
NCBI-ProteinID:
XP_020952419
LinkDB
All DBs
Position
6:166491649..166513137
Genome browser
AA seq
1275 aa
AA seq
DB search
MAGPPPLGELPPGYASPDGSAAPQILAGSLKAPLWLRASFQGLLFSLGCAVQRHCGKVLF
LGLLAFGALALGLRVAVIETDLEQLWVEAGSRVSQELQYTKEKLGEEAAYTSQMLIQTPR
QEGENVLTPEALGLHLQAALTASKVQVSLYGKSWDLNKICYKSGVPLIENGMIERMVEKL
FPCVILTPLDCFWEGAKLQGGSAYLPGRPDIQWTNLDPEHLLEELGPFASLEGFRELLDK
AQVGQAYVGRPCLHPDDLHCPPSAPNHHSRQAPNVAQELSGGCHGFSHKFMHWQEELLLG
GMARDPQGQLLRAEALQSTFLLMSPRQLYEHFRGDYQTHDIGWSEEQAGTVLQAWQRRFV
QLAQEALPGNASQQIHAFSAATLDDILHAFSEVSATRVVGGYLLMLAYACVTMLRWDCAQ
SQGAVGLAGVLLVALAVASGLGLCALLGIAFNAATTQVLPFLALGIGVDDIFLLAHAFTE
APPGTPLQERTGECLQRTGTSVALTSINNMVAFFMAALVPIPALRAFSLQAAIVVGCNFA
AVMLVFPAVLSLDLHRRHCQRLDVLCCFASPCSARVIQILPQELGDGTVPVGIARLTATV
QAFAHCEASSQHVVTILPPQTHLVPPPSDPLGSELFSPGGSTRDLLGQEEGTRQKAACKS
LSCAHWNLAHFARSQFAPLLLQPHAKAMVLVLFGALLGLSLYGATLVQDGLALTDVVPRG
TKEHAFLSAQLRYFSLYEVALVTQGGFDYAHSQRALFDLHQRFSSLKAVLPPPATQAPRT
WLHYYRNWLQEIQAAFDQDWASGRITRHSYRNGSEDGALAYKLLIQTGDAQEPLDFSQLT
TRKLVDQEGLIPPELFYVGLTVWVSSDPLGLAAAQANFYPPPPEWLHDKYDTTGENLRIP
AAQPLEFAQFPFLLRGLQKTADFVEAIEGARAACAEAGRAGVRAYPSGSPFLFWEQYLGL
RRCFLLAICLLLAGTFFVCALLLLSPWTAALIVLVLAMMTVELFGIMGFLGIKLSAIPVV
ILVASVGIGVEFTVHVALGFLTAQGSQNLRAARALEHTFAPVTDGAVSTLLGLLMLAGSN
FDFIVRYFFVVLTVLALLGLLHGLVLLPVLLSILGPPPEVTTPAFCSRPAGWGGKGKGRD
RDRTGGAQWPTDGAQLTRTPPHEVPPTEGGILPFCPDRQHVPLPQTPSKTHLSLSGSRAG
CRVCPRPNILSLISSHILLEATGGPQEPELTGADVSPARSYRCTRRAQRSRAPRLHGQEG
SGGNCHPPCPRALPE
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atggctggaccgccacccctcggggagctacccccgggctacgcatccccagatggatct
gcagcaccccagatcctagctgggagcctgaaggctcccctctggctgcgtgcttccttc
cagggcctgctcttctctctgggctgcgcggtccagagacactgtggcaaagtactcttc
ctgggactgttggcctttggggccctggcactgggcctccgcgtggccgtcattgagaca
gacctggaacagctctgggtggaagccggcagccgggtgagccaggagctgcaatacacc
aaggagaagctgggggaggaggcggcgtacacctcgcagatgctgatacagaccccgcgc
caggagggggagaacgtcctcacgcccgaggcccttggcctccacctccaggcagccctc
accgccagtaaagtgcaagtgtccctctatggaaagtcctgggacttgaacaaaatctgc
tataagtctggagttcccctaattgaaaacggaatgatcgagcggatggtcgagaagctg
ttcccgtgcgtgatcctcacccccctcgactgcttctgggagggagccaaactccaaggg
ggctctgcctacctgccgggccgccccgacatccagtggaccaacctggatccggagcac
ctactggaggagctgggcccctttgcctccctcgagggcttccgggagctgctggacaag
gcacaggtgggccaggcctacgtggggcggccctgtctgcaccctgacgacctccactgc
ccgcctagtgcccctaaccaccacagcaggcaggctcccaatgtggctcaggagctgagc
gggggctgccacggcttctcccacaagttcatgcactggcaggaggaactgctgctgggg
ggcatggccagggacccccaaggacagctgctgagggcagaggccctgcagagcaccttc
ctgctgatgagcccccgccagctgtacgagcacttccggggcgactaccagacccacgac
atcggctggagcgaggagcaggccggcacggtgctgcaggcctggcagcggcgcttcgtg
cagctggcccaggaggccctgcctgggaacgcgtcccagcaaatccacgccttctccgcc
gccaccctggacgacatcctacacgccttctccgaagtcagcgccacccgtgtggtggga
ggctacctgctcatgctggcctacgcctgcgtgaccatgctgcggtgggactgtgcccag
tcccagggagctgtgggccttgccggggtgctgctggtggccctggcggtggcctcgggc
ctcgggctctgtgccctgctcggcatcgccttcaatgctgccactacccaggtgctgccc
ttcttggcactgggaatcggcgtggatgacatattcctgctggcacatgccttcacagag
gctccgcctggcacccctctccaggagcgcaccggtgagtgtctgcagcgcacgggcacc
agcgtcgcgctcacgtccatcaacaacatggtggccttcttcatggccgccctcgtgccc
atccctgccctgcgggccttctccttgcaggcggccatagtggtcggctgcaacttcgca
gccgtgatgcttgtcttcccggcggtcctcagcctggacctgcaccggcgccactgccag
cgccttgatgtgctctgctgcttcgcaagcccctgctctgctcgggtgattcagattctg
ccccaggagctgggggatgggacagtacccgtgggcattgcccgcttgactgccaccgtt
caagcctttgcccactgtgaagccagcagccagcatgtggtcaccatcctgcctccccaa
acccacctggtgcccccaccttctgaccctctgggctctgagctcttcagcccgggaggg
tccacacgggaccttctaggccaggaggaggggacacggcagaaggcagcctgcaagtcc
ctgtcctgtgcccactggaatcttgcccatttcgcccgctctcagtttgcacccttgctg
ctccaaccccatgccaaggccatggtgctggtactttttggggctcttctgggcctgagc
ctctatggagcaaccttggtgcaggatgggctggccctgacagatgtggtgcctcggggc
accaaggagcatgccttcctgagcgcccagctcaggtacttctccctgtacgaggtggcc
ctggtgacccagggtggctttgactacgcccactcccaacgcgccctctttgatctgcac
cagcgcttcagttccctcaaggccgtgctgcccccaccggccacccaggcgccccgcacc
tggctgcactattaccgcaactggctccaggaaatccaggctgcgtttgaccaggactgg
gcttccgggcgcatcacccgccactcgtaccgcaatggctccgaggatggcgccctggcc
tacaagctgctcatccagaccggggatgcccaggagcctctggatttcagccagctgacc
acgaggaagctggtggaccaggaggggctgattccacccgagctcttctacgtggggctg
accgtgtgggtgagcagcgaccccctgggtctggcagccgcgcaggccaacttctacccc
ccgcctcccgagtggctgcatgacaagtatgacaccaccggggagaaccttcgcatcccg
gcggcccagcccttggagttcgctcagttccctttcctactgcgcggcctccagaagacc
gcagacttcgtggaggccatcgagggggcccgggcagcatgtgctgaggcaggccgggct
ggggtgcgtgcctaccccagcggctccccgttcctcttctgggagcagtacctgggcctg
cgacgctgcttcctgttggccatctgcctcctgctggcgggcactttcttcgtctgcgcc
ctgctgctgcttagcccctggacggctgccctcatcgtgctggtcctggcgatgatgacc
gtggagctctttggcatcatgggtttcctgggcatcaagctgagcgccatccccgtggtg
atcctggtggcgtctgtgggcatcggtgtcgagttcactgtccacgtggctctgggcttc
ctgaccgcccagggtagccagaacctgcgggctgcccgcgccctggagcacacattcgcc
ccggtgaccgatggcgccgtctccacgttgctgggtctgctcatgcttgctggttccaac
tttgacttcatcgtcaggtacttcttcgtggtgctgacagtcctcgcgctgctgggcctc
ctccacgggctggtgctgctgcctgtgctgctgtccatcctgggccccccgccagaggtg
accacacccgccttctgctcccggcccgcaggatggggcgggaaaggcaaggggagggac
agagacaggacagggggcgctcagtggccaacagacggggctcaactcacaaggacacct
ccccatgaggtgccaccaactgaaggtggcatcctccccttttgcccagacagacaacat
gtccctctcccccagactccttcaaagacccaccttagcctttcggggtcccgagcaggg
tgcagggtttgccccaggcccaacatcctgtccttgatcagctctcacatcctgctggaa
gccaccggaggaccccaggagcccgagctcactggggctgatgtctcccctgccaggtcg
tacagatgtacaaggagagcccagaggtcacgagccccccggctccacgggcaggagggc
tcaggtgggaactgccacccaccttgcccgagagctttgccagagtga
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