Sus scrofa (pig): 100623572
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Entry
100623572 CDS
T01009
Symbol
TRIM71
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
ssc
Sus scrofa (pig)
Pathway
ssc05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
100623572 (TRIM71)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100623572 (TRIM71)
04121 Ubiquitin system [BR:
ssc04121
]
100623572 (TRIM71)
Enzymes [BR:
ssc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100623572 (TRIM71)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100623572 (TRIM71)
Ubiquitin system [BR:
ssc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
100623572 (TRIM71)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NHL
DUF4934
Filamin
DUF5128
zf-B_box
ANCHR-like_BBOX
SGL
zf-C3HC4
zf-RING_5
zf-B_box_Trim66
CRLF3_N
Motif
Other DBs
NCBI-GeneID:
100623572
NCBI-ProteinID:
XP_020927211
UniProt:
A0A4X1UE01
A0A287B2L2
LinkDB
All DBs
Position
13:18762043..18835788
Genome browser
AA seq
869 aa
AA seq
DB search
MASFPETDFQICLLCKEMCGSPAPLSSNSSASSSSSQTSTSSGGGGGGPGAAARRLHVLP
CLHAFCRPCLEAHRLPAAGGGAPGEPLKLRCPVCDQKVVLAEAAGMDALPSSAFLLSNLL
DAVVATAEEPPPKNGRAGAAAGAGGHSNHRHHAHHAHPRAAASAPQPLPPAPPPPAPPRS
APGGPAASPSALLLRRPHGCSSCDEGNAASSRCLDCQEHLCDNCVRAHQRVRLTKDHYIE
RGPPGPAAAAAAQQLGLGPSFSGAPFSILSVFPERLGFCQHHDDEVLHLYCDTCSVPICR
ECTVGRHGGHSFVYLQEALQDSRALTIQLLADAQQGRQAIQLSIEQAQTVAEQVEMKAKV
VQSEVKAVTARHKKALEERECELLWKVEKIRQVKAKSLYLQVEKLRQNLNKLESTISAVQ
QVLEEGRALDILLARDRMLAQVQELKTVRSLLQPQEDDRVMFTPPDQALYLAIKSFGFVS
SGAFAPLTKATGDGLKRALQGKVASFTVIGYDHDGEPRLSGGDLMSAVVLGPDGNLFGAE
VSDQQNGTYVVSYRPQLEGEHLVSVTLCNQHIENSPFKVVVKSGRSYVGIGLPGLSFGSE
GDSDGKLCRPWGVSVDKEGYIVVADRSNNRIQVFKPCGAFHHKFGTLGSRPGQFDRPAGV
ACDASRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILVSDT
RNHRIQLFGPDGVFLNKYGFEGALWKHFDSPRGVAFNHEGHLVVTDFNNHRLLVIHPDCQ
SARFLGSEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFESNGSFLCKFGAQGSGFG
QMDRPSGIAVTPDGMIVVVDFGNNRILIF
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgttccccgagaccgacttccagatctgcctgctgtgcaaggagatgtgcggc
tcgccggcgccgctttcctccaactcgtcggcgtcgtcgtcgtcttcgcagacgtccacg
tcgtcggggggcggtggcgggggccccggggccgcggcgcgccgcctgcacgtcttgccc
tgcctgcacgccttttgccgcccttgcctcgaggcgcaccggctgccggcggcgggcggt
ggcgcgccaggagagccgctcaagctgcgctgccccgtgtgcgaccagaaggtcgtgctg
gccgaggcggcgggcatggacgcgctgccctcgtctgccttcctgcttagcaacctgctc
gacgccgtggtggccacggccgaggagccgccgcccaagaacggacgagccggcgcagcg
gcgggcgctggcggccacagcaaccaccggcaccacgcgcaccacgcgcacccgcgcgcg
gccgcctcggcgccgcagccgctcccgcccgcgccgccaccgcccgcgcctccacgctca
gcgccaggcggccccgccgcctccccgtcggcgctgctgctgcgtcgaccccacggctgc
agctcctgcgacgagggcaacgcggcctcgtctcgctgcctcgactgccaggagcacctg
tgcgacaactgcgtccgcgcgcaccagcgcgtgcgcctcaccaaggaccactacatcgaa
cgcggcccgcctggccccgcggccgccgccgcggctcagcagctcgggcttgggccgtcc
ttctctggcgctcccttttccatcctttcggtcttccccgagcgcctcggcttctgccag
caccacgacgatgaggtgctgcacctgtactgtgacacctgctccgtgcccatctgccgg
gagtgtacggtgggccggcatggcggccacagcttcgtctacctccaggaggcattgcaa
gactctcgggcgctcaccatccagctgctggctgatgcccagcagggccgccaggccatc
cagctgagcatcgagcaggcccagacagtggcagagcaggtggagatgaaggccaaggtg
gtacagtcggaggtcaaagccgtgacagcaagacacaagaaggccctggaggagcgggaa
tgtgagctgctgtggaaggtagagaagatccgccaggtgaaagccaagtctctctaccta
caggtggagaagctgcggcagaacctgaacaagctggagagcactatcagtgccgttcag
caggtcctggaggaggggagggcgctggacatcctgctggcccgagaccgcatgttggcc
caggtgcaggagctgaagactgtgcgcagcctcctgcagccccaggaggatgaccgagtc
atgttcacgcctcctgaccaggccctgtaccttgccatcaagtcctttggctttgtcagc
agcggggccttcgcgccactcaccaaggccacaggcgatggcctcaagcgggccctccag
ggaaaggtggcctccttcaccgtcattggctacgaccatgatggggagccccgcctctca
ggcggtgacctcatgtctgccgtggtcctgggccccgacggcaacctgtttggtgcagag
gtgagtgaccagcagaacggcacctacgtggtgagctaccggccccagctggagggcgag
cacctggtgtcagtcaccctatgtaaccagcacatcgagaacagccccttcaaggtggtg
gtcaagtccggccgcagctacgtgggcatcgggctcccgggcctgagcttcggcagtgag
ggcgacagcgacggcaagctctgccggccctggggtgtgagtgtggacaaggagggctac
atcgtggtggctgaccgcagcaacaaccgcatccaggtgtttaagccctgcggtgccttc
caccataagttcggcacgctgggctcccggcctggccagttcgaccggccagctggggtg
gcctgcgatgcctcccgcaggatcgtggtggccgacaaggacaatcatcgcatccagatc
ttcaccttcgagggccagttccttctcaagttcggcgaaaagggcaccaagaatgggcag
ttcaactacccttgggatgtggcggtgaattctgagggcaagatcctggtctctgacacg
cggaaccaccggatccagctatttgggcccgacggggtcttcctgaataagtatggcttc
gagggggcgctctggaagcactttgactccccgaggggggtggctttcaaccacgagggc
cacttggtggtcaccgacttcaacaaccaccgcctcctggtcatccatcccgactgccag
tcagcccgcttcctgggctcggagggcaccggcaacgggcaattcctgcgcccgcagggc
gtggcagtggaccaggaggggcgcatcattgtggccgactccaggaaccaccgggtgcag
atgttcgagtccaacggcagcttcctgtgcaagtttggggcccagggcagcggctttggg
cagatggaccgcccctctggcattgccgtcacaccagacggcatgatcgtcgtggtggac
tttggcaacaatcgaatcctcatcttctaa
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integrated database retrieval system
