KEGG   Sus scrofa (pig): 100623720
Entry
100623720         CDS       T01009                                 
Name
(RefSeq) collagen alpha-1(VI) chain
  KO
K06238  collagen type VI alpha
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04151  PI3K-Akt signaling pathway
ssc04510  Focal adhesion
ssc04512  ECM-receptor interaction
ssc04820  Cytoskeleton in muscle cells
ssc04974  Protein digestion and absorption
ssc05165  Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    100623720
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    100623720
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    100623720
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    100623720
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    100623720
 09160 Human Diseases
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    100623720
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ssc04147]
    100623720
   00536 Glycosaminoglycan binding proteins [BR:ssc00536]
    100623720
Exosome [BR:ssc04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   100623720
Glycosaminoglycan binding proteins [BR:ssc00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   100623720
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   100623720
SSDB
Motif
Pfam: VWA Collagen VWA_2 VWA_3 VWA_CoxE YcaO
Other DBs
NCBI-GeneID: 100623720
NCBI-ProteinID: XP_020926753
Ensembl: ENSSSCG00000022506
UniProt: A0A4X1T5I1
LinkDB
Position
13:208295245..208321789
AA seq 1027 aa
MKLARALLPLLLQACWATAQDDLIDTRAVAFQDCPVDLFFVLDTSESVALRLKPYGALVD
KVKSFTKRFIDNLKDRYYRCDRNLVWNAGALHYSDEVEIIRGLTRMPGGRDALKDSVDAV
KYFGKGTYTDCAIKKGLEELLVGGSHLKENKYLIVVTDGHPLEGYKEPCGGLEDAVNEAK
HLGIKVFSVAITPDHLEPRLSIIATDHTYRRNFTAADWGQSRDAEEVISQTIHTIADMIK
NNVEQVCCSFECQPARGPPGLRGDPGYEGERGKPGLPGEKGEAGDPGRPGDLGPVGYQGM
KGEKGSRGEKGSRGPKGYKGEKGKRGIDGVDGMKGETGYPGLPGCKGLPGFDGVQGPPGP
KGDAGAFGLKGEKGEPGADGEPGRPGNTGPPGDEGEPGEPGPPGEKGEAGDEGNPGPDGA
PGERGGPGERGPRGTPGVRGPRGDPGEAGPQGDQGREGPVGVPGDPGEAGPVGPKGYRGD
EGPPGPEGPKGAPGPAGPPGDPGLMGERGEDGPPGNGTEGFPGFPGYPGSRGPPGINGTK
GYPGLKGDEGEAGDPGEDNNDVAPRGAKGAKGYRGPEGPQGPPGHVGPPGPDECEILDIV
MKMCSCCECTCGPIDILFVLDSSESIGLQNFEIAKDFIVKVIDRLSRDELVKFEPGQSHA
GVVQYSHNQMQEHVDLRDPNIRNAQDLKEAIKKLQWMGGGTFTGEALQYTRSQLLPPTQN
NRIALVITDGRSDTQRDTTPLSVLCGPDIQVVSVGIKDVFGLAASSDQLNVISCQGLVTP
GRPGISLVKENYAELLDDAFLKNITTQICIDKKCPDYTCPITFSSPADITILLDGSASVG
SHNFDTTKRFAKRLAERFLTAGRTDPAHDVRVAVLQYSGTGQQQPERAALQFLQNYTVLA
STVDAMGFFNDATDVTDALGYVTRFYREASSGAAKKKLLLFSDGNSQGTTAAAIEKAVQE
AQRAGLEVFVVVVGRQVNEPHIRVLVTGKTAEYDVAFGERHLFRVPSYQALLRGVFYQTV
SRKVALD
NT seq 3084 nt   +upstreamnt  +downstreamnt
atgaagctggcccgtgctctgctgcccctgctgctgcaggcctgctgggccactgcgcag
gacgacctgatagacacaagggccgtcgcgttccaagactgccccgtggacctgttcttc
gtgctggacacctcggagagtgtggccctgaggctgaagccctacggggccctggtggac
aaggtcaagtccttcaccaagcgcttcatcgacaacctgaaggacaggtactaccgctgc
gaccgcaacctggtgtggaacgcgggcgcgctgcactacagcgacgaggtggagatcatc
cgcgggctcacgcgcatgcccggcggccgcgacgcgctcaaggacagcgtggacgcggtc
aagtacttcggcaaaggcacctacacggactgtgccatcaagaaggggctggaggagctg
ctcgtggggggctcccacctgaaggagaacaagtacctcatcgtggtgaccgacgggcac
cccctcgagggctacaaggagccctgcgggggcctggaggacgccgtgaacgaggccaag
cacctgggcatcaaagtcttctccgtggccatcacgcccgaccacctggagccacgcctg
agcatcatcgccaccgaccacacgtaccggcgcaacttcacggcggccgactggggtcag
agccgcgacgcggaggaggtcatcagccagaccatccacaccatcgccgacatgattaaa
aataacgtggagcaagtgtgctgctccttcgagtgccagcccgcccggggacctccaggg
ctgcggggtgaccctgggtacgagggagaacgagggaagccggggctccccggggagaaa
ggagaagccggagaccccgggaggcccggagaccttggacccgtcggctaccagggcatg
aagggagaaaaagggagccgaggggagaagggttccaggggacccaagggctacaagggc
gagaaggggaaacgtggcattgacggcgtggatggcatgaagggggagacggggtacccc
ggcctgccaggctgcaagggcttgcccggattcgacggtgtccaaggacccccagggccc
aagggtgacgcaggcgccttcggactgaaaggcgagaagggggagcctggagcagatggg
gagcctgggcggccagggaacacaggtccccctggagacgagggcgagcctggagagcct
ggtccccccggagagaagggagaagccggcgacgaggggaacccaggaccagacggcgcc
ccgggagagaggggcggccctggggaaagaggaccacgggggaccccaggcgttcggggc
ccaagaggagacccgggtgaagctggaccccaaggtgaccagggacgagaaggccccgtc
ggtgtccccggagacccgggcgaggctgggcccgttggaccgaaagggtaccgcggagac
gaggggcccccagggcctgagggtcccaagggagccccagggccggcaggaccccccgga
gaccccgggctgatgggggaaaggggtgaagacggcccccccggaaacggcaccgagggc
ttccctggcttccccggctatccgggcagcaggggacctcccgggataaacggcactaaa
ggctaccccggcctcaagggggacgaaggagaagccggggaccccggagaggacaacaac
gacgtcgctccccgaggcgccaaaggagcgaaggggtaccgaggccctgaaggcccccag
ggacccccaggacatgtgggaccaccggggccagatgaatgcgagattttggacattgtc
atgaagatgtgctcctgctgtgagtgcacgtgcggccccatcgacatcctcttcgtgctg
gacagctctgagagcatcggcctgcagaacttcgagatcgccaaggacttcatcgtcaag
gtcatcgaccggctgagcagggacgagctggtcaagtttgagcctgggcagtcccatgcg
ggcgtagtgcagtacagtcacaaccagatgcaggagcacgtggacctgagggaccccaac
atcaggaacgcccaggacctcaaggaagccatcaagaagctgcagtggatgggcggaggc
acgttcacgggcgaggccctgcagtacacccggagccagctgctgccccccactcagaac
aaccggatcgccctggtcatcacggacggccgctcagacacccagagggacaccaccccg
ctgagcgtgctctgcggccccgacatccaggtggtctccgtgggcatcaaggatgtgttt
ggcttagccgcgagctccgaccaactcaacgtcatttcctgccaaggcctggtgaccccg
gggcggccgggcatctcgctggtcaaggagaactacgcagagctgctggacgacgccttc
ctgaaaaacatcaccacccagatctgcatagacaagaagtgtccggattacacctgcccg
atcaccttctcctccccggccgacatcaccatcctgctggacggctcggccagcgtgggc
agccacaacttcgacaccaccaagcgctttgccaagcggctggccgagcgcttcctgacg
gcgggccgcacggacccggcccacgacgtgcgcgtggcggtgctgcagtacagcggcacc
ggccagcagcagcccgagcgcgcggcgctgcagttcctgcagaactacaccgtgctggcc
agcaccgtggacgccatgggcttcttcaacgacgccaccgacgtcaccgatgccctcggc
tacgtgacccgcttctaccgcgaggcctcgtccggcgccgccaagaagaaactgctgctc
ttctccgacggcaactcgcagggcaccacggcggccgccatcgagaaggcggtgcaggag
gcccagcgggcaggcctcgaggtcttcgtggtggtggtgggccgccaggtgaacgagccc
cacatccgcgtcctggtcaccggcaagacggccgagtacgacgtggccttcggcgagcgc
cacctgttccgcgtgcccagctaccaggccctgctccggggcgtcttctaccagactgtg
tccaggaaggtggccctggactag

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