Sus scrofa (pig): 100624675
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Entry
100624675 CDS
T01009
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100624675 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssc04147
]
100624675 (COL18A1)
00535 Proteoglycans [BR:
ssc00535
]
100624675 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
ssc00536
]
100624675 (COL18A1)
Exosome [BR:
ssc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100624675 (COL18A1)
Proteoglycans [BR:
ssc00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
100624675 (COL18A1)
Glycosaminoglycan binding proteins [BR:
ssc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100624675 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Fz
DUF959
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
100624675
NCBI-ProteinID:
XP_020927188
LinkDB
All DBs
Position
13:207907835..207984082
Genome browser
AA seq
1756 aa
AA seq
DB search
MAPDPSGRPGHLGLLLLLACCLAATWADPFPWLWFSEATMPKATPASVPQATPAPVPPGS
SPEQRPETPPRTWTPGMAPPTRGKPRPALSLVWRGWRGARARAPLSPRPPREPGPQGGEH
RGCGSQDPERGSGHPALHPAVGRHHAPRELRRRGDASPPTPTDPLTTPGPSSTLWESGTT
LWLSSGAPSSPDTQRTEAGTQPLPTQPPPSPGGPLAPFRAPSVPPPAPGRASLSPAPGGA
PPWGSQLSPGWSQELDGKGLLPVAARPGQQHRHPDVRRPPLLPLVTGSPGAHGPSALSSG
APATLSYVALAALIGDGGAWLPHVANSSGPGLAHTSAQLGATGRCLPLPPSLAICSRLGI
GRVWLPNHLHHGSGEEVQAAARAWGALLQTRCHRFLAWFFCLLLAPPCGLGPAAPPPCRQ
FCETLEDACWSHLDGGGLPVPCASLPAREDGHCVFIGPAAEGEAVEVGLQQMLGEPLPRQ
VALVHDPDVGPAYEFDGISGVGQAALSLVPRTFFHDFSLLMRVRPASAGAGVLFAVTDAA
QAVVLVGVKLAAARGGQQQVQLLYTEPGATRTRTAASFTLPALHGRWTHLALSVDGAHVA
LFVDCEEVQLEPLSRSLRALQLEPDARLFVAQAGRADPDKFQGMISELRVRGDPQVSPLQ
CRYGDEDEDDSDNEASGDLGSGLAEEAGERLGAPSGAPLRPRLPEAPPVTSPPLAGAGDE
EDSRTEEVEEATTVPSPGAQTLPGSGAVTTWDGSSWSPGDSLEERGLKGQEEPGAQGLPG
QASPQGPTGPVMRSPEAQPVPGPQGPPGPPGPPGKDGAPGRDGEPGDPGEDGKPGDTGPQ
GFPGTPGDVGPKGEKGDPGVGPRGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLES
LRGPRGFPGPPGPPGVPGLPGEPGRFGMNSSDVPGPAGLPGVPGRDGAPGPPGPPGPPGF
PGRDGQAGQTGQKGSVGEVGAPGPKGSKGDPGPVGAPGNPGLAGVPGPAGPPGPPGPPGP
PGPGLAAGFDDMEGSGGPFWWAAQGADRPQAPPGPPGVKGDPGAVGPAGTKGEVGADGAP
GLPGLPGREGAAGPQGPKGEKGTRGDKGDPGKDGVGQPGLPGPPGPPGPVVYVSDRAVAS
VPGPEGRTGFAGFPGPAGPKGDLGSKGQPGLPGPKGEKGEPGTVFSPDGRPLTPAQKGAK
GEPGFRGPPGPYGRPGHKGEIGFPGRPGRPGMNGLKGEKGEPGDASVGFSLRGPPGPPGP
PGPPGPAGTPVYDSNAFVESGRPGPPGLPGYQGPPGPKGDKGEMGPPGPPGQFPFDLLHM
EAELKGEKGDRGEAGQKGERGEPGGGGFFGSSVPGPPGPPGYPGIPGPKGESIRGQPGPP
GPQGPPGIGYEGRQGPPGPPGPPGPPGPPSFPGPYRQTISVPGPPGPPGPPGPPGSMGGS
SGQVRVWATYQTMLDKVPEVPEGWLMFVAEREELYVRVRNGFRKVLLEARTPLPRGTGTD
NEVAALQPPVVQLHEGNPYPRREPPQPTARAWRGDDIRASPPRLPVAQPYPGAPHHGAYV
HPRPVHPTGSPAHTHHDFQPVLHLVALNSPQSGGLRGIRGADFQCFQQARAVGLAGTFRA
FLSSRLQDLYSIVRRADRAAVPIVNLRDEVLFPSWEALFSGSEGQLKPGARIFSFDGRDV
LQHPAWPQKSVWHGSDPSGRRLTESYCETWRTEARTATGQASSLLAGRLLEQKAAGCHHA
FIVLCIENSFMTSASK
NT seq
5271 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgaccccagcggccggcctggccacctcggcctgctgctgctgctcgcctgc
tgcctcgcggccacctgggccgacccctttccctggctgtggttctctgaggccaccatg
cccaaggccacgccggcatctgtgccccaggccacgccggcccccgtgcccccgggcagc
tcacctgagcagcgcccagagacaccaccgcgcacgtggacccctgggatggcgccaccg
acgcgggggaagccccggccagccctgagcctcgtctggagaggctggaggggggccagg
gccagggccccgctctccccacggcccccccgggagccgggaccccaaggaggagaacat
cgcgggtgtgggagccaagatcctgaacgtggctctgggcatccagcgcttcatccggct
gtgggacgacaccacgcaccccgagagctccgccggcggggggacgccagccctccgacc
cccacagaccccctcaccacccccgggccgtccagcaccctctgggagagtggaaccacg
ctctggctgagcagtggggccccgagctcgccagacacccagaggacggaggccggcacc
cagccgctgcccacccagccgccgccctccccaggcgggcccctggcgccgttcagggca
ccctcggtaccaccaccagccccaggtagagcttctctgtcccccgcaccaggtggggct
cctccctggggaagccagctgtctcccgggtggtcccaggagctggacggcaaaggactc
ttgcccgtggcagccaggccaggccagcagcaccgacaccctgacgtccgcaggccacct
ctgcttcccttggtgacgggctctcctggcgcgcacggcccttcggctctctcctctggc
gcccctgccacgctgtcctacgtcgcattggcagctctaattggggacggtggtgcttgg
cttccccacgtggctaattcttcggggcctggtctcgctcatacctccgcacagctcggg
gccaccggccgctgcctgcctctgccgccctccctggcgatctgcagccgcctgggcatc
gggcgtgtctggctgcccaaccacctgcaccacgggagcggcgaggaggtgcaggccgcg
gcccgggcctggggggcgctcctccagacccgctgccaccgcttcctcgcctggttcttc
tgcctgctgctcgccccgccctgtggcctgggccctgccgccccaccgccctgccgccag
ttctgcgagaccctggaggacgcatgctggagccacctggacgggggcgggctgccggtc
ccctgcgcctcgctcccggcacgggaggacgggcactgcgtgttcattgggccggctgca
gagggcgaggccgtcgaggttgggctccagcagatgctcggggagcccctgccgcggcag
gtggccctggtgcacgaccctgacgtggggcccgcctacgagttcgacgggatcagcggt
gttggccaggcggccctgagcctcgtgccccgcacgttcttccacgacttctcgctgctc
atgcgcgtgcggccggcctcagccggcgcaggcgtgctgttcgcggtcacggacgcggcg
caggcggtggtcttggtgggcgtgaagctggcggcggcgcgcggggggcagcagcaggtg
cagctgctgtacacggagcccggcgccacccgcacacgcacggccgccagcttcacactg
cccgcgctccacggtcgctggacgcacctggcgcttagcgtggacggcgcgcacgtcgcg
ctcttcgtggactgtgaggaggtccagctggagcccctgtcgcgctccctgcgcgccctg
cagctggagcccgacgcccgcctcttcgtggctcaggccggccgagcggaccctgacaag
ttccagggcatgatctcagagctgagggtgcgcggggacccccaggtgagccccctgcag
tgtcggtacggggacgaggacgaggacgacagtgacaacgaggcttccggagacttgggc
agcgggctcgccgaggaggccggggagcgtctcggggcgccgtcgggcgcgcccctgagg
ccccggctcccagaggcccccccagtcacctccccgcccttggctggagctggcgacgag
gaggattccaggacagaggaggtcgaggaggccaccacggtgccgtcgccaggagctcag
accctgcctggctcgggagctgtcaccacgtgggacgggagcagctggagccctggggac
agcctggaagagcgaggcctgaaggggcaggaggagccaggggctcagggcctgcctggc
caggccagtccccagggtcccacaggccccgtgatgcggagccccgaagcacagcctgtt
cctgggccgcagggaccccccggccccccaggacctccagggaaagacggtgcccccggc
agggacggcgagccgggtgaccctggcgaagacgggaaacccggggacactgggccgcag
ggcttccccggaacccccggagacgtgggccccaagggtgagaagggcgaccctggggtc
gggccgaggggacccccaggaccccaagggcctccagggcccccaggaccctccttcaga
cacgacaagctgaccttcatcgacatggaggggtctgggtttggcggcgacctggagagc
ctccgaggccctcgaggcttcccggggccccccggcccccccggcgtcccaggcctgccc
ggagagccaggccgcttcgggatgaacagttccgatgtccctggccccgcaggccttccc
ggagtgcctggacgggacggagcccctgggcctcccgggcccccgggccccccaggtttc
ccaggaagagatgggcaagcagggcagaccggccagaaaggcagcgtcggcgaggtgggc
gcccccggaccgaagggaagcaagggagaccccggccccgtcggcgctcctgggaacccc
ggcctggcaggggtccccggaccagcaggaccaccagggccccccgggccccccggacct
ccaggcccaggacttgccgccgggtttgacgacatggaaggctccgggggacccttctgg
tgggctgcccaaggcgccgacaggccgcaggcaccgcccggcccgcccggagtcaagggg
gatcctggagccgtggggccagcagggaccaagggagaagtcggagcagacggagctccc
gggttgcccggcctccccggcagagagggcgcagctggaccccagggaccaaaaggagag
aagggcacccggggagacaaaggagaccccgggaaggacggagtggggcagccgggcctc
ccgggaccccctggacccccagggcctgtcgtctatgtatcagacagagcggtggcgagc
gtgccaggccccgagggccgcacggggtttgcaggcttccccggaccggccgggccaaag
ggtgacctgggctccaaaggccagccaggcctcccgggacccaagggcgagaagggcgag
ccaggcacagtcttcagccccgacggcagaccactgacccctgcccagaaaggagccaag
ggtgagcctggcttccgaggacccccgggtccatatgggcggcccgggcacaagggagag
attggcttccccggacggccgggtcgccccgggatgaacggattgaaaggggagaagggg
gagccgggagatgccagcgtgggattcagcctgaggggtccgcctggcccacccgggccc
ccagggcccccaggccccgccgggactcctgtctatgacagcaacgcgtttgtggagtcc
ggccgccctggacccccaggactgccagggtaccaggggcctcctgggccgaagggtgac
aaaggagagatgggcccacctggaccaccagggcagttcccgttcgacctcctccacatg
gaagctgagctgaagggggagaagggcgaccgaggggaagccgggcagaaaggagaaagg
ggcgagccggggggcggcggattcttcggctccagcgtgcccggtccccctggcccgcca
ggctaccctgggattccgggtcctaagggagagagcatccggggccaacctggccctccc
ggacctcagggaccacctggcatcggttacgaaggccgccaggggccgccaggacctccg
gggcccccaggaccaccggggcccccttcctttcctggcccttacaggcagactatcagc
gttccaggccccccaggcccacctgggccaccgggaccccctggatccatgggcggctcc
tcagggcaggtgagggtctgggccacgtaccagaccatgctggacaaggtgcccgaggtg
ccggagggctggctcatgtttgtggccgagagggaggagctgtacgtccgtgtccggaat
gggttccggaaggttctgctggaggcccgcacgccactgccacgtgggacggggacggac
aacgaggtagccgccttgcagccgccggtggtgcagctgcacgagggcaacccttacccc
cgccgggagcctccccagcccacggctcgggcctggcggggggacgacatccgggccagc
cccccgcgcctgcctgtcgcccagccctacccgggggccccgcaccacggcgcctacgtg
cacccccggccggtgcaccccacgggctcgcccgcccacacccaccacgacttccagccg
gtgctacacctggtcgcgctcaacagcccgcagtcgggcggcctgcgcggcatccgcggc
gccgacttccagtgcttccagcaggcgcgcgccgtggggctggcgggcaccttccgcgcc
ttcctgtcctcgcggctgcaggacctctacagcatcgtgcgacgcgccgaccgcgccgcc
gtgcccatcgttaacctcagggacgaggtgctgttccccagctgggaggccttgttctcg
ggctctgagggccagctgaagcccggcgcccgcatcttctctttcgacggcagagacgtc
cttcagcaccctgcctggccccagaagagcgtgtggcacggctcagaccccagcgggcgc
cggctgaccgaaagctactgtgagacgtggcggactgaggccaggacggccacgggccag
gcctcctcgctgctggcgggccggctgctggagcagaaggccgccggctgccaccacgcc
ttcattgttctctgcatcgagaacagcttcatgacctccgcctccaagtag
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