KEGG   Sus scrofa (pig): 100624767
Entry
100624767         CDS       T01009                                 
Symbol
LSM5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5 isoform X1
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03018  RNA degradation
ssc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100624767 (LSM5)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100624767 (LSM5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssc03019]
    100624767 (LSM5)
   03041 Spliceosome [BR:ssc03041]
    100624767 (LSM5)
Messenger RNA biogenesis [BR:ssc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100624767 (LSM5)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     100624767 (LSM5)
Spliceosome [BR:ssc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    100624767 (LSM5)
SSDB
Motif
Pfam: LSM SM-ATX LSM12_LSM LSM14
Other DBs
NCBI-GeneID: 100624767
NCBI-ProteinID: XP_005673329
Ensembl: ENSSSCG00000026064
UniProt: A0A4X1SQM6
LinkDB
Position
18:40752390..40755909
AA seq 91 aa
MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLVPGGEGPEV
NT seq 276 nt   +upstreamnt  +downstreamnt
atggcggctaacgctacgactaacccgtcgcagctgctacctctagagcttgtagacaag
tgtataggatcaagaattcacattgtgatgaagagtgataaagagattgttggcacgctt
ctcggatttgatgactttgtcaatatggtactggaagatgtcactgaatttgaaatcaca
ccagaaggaagaagaattactaagttagatcaaattttgctaaatggaaataatataaca
atgctggttcctggaggagaaggacctgaagtatga

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