Sus scrofa (pig): 100626142
Help
Entry
100626142 CDS
T01009
Symbol
PEX1
Name
(RefSeq) peroxisome biogenesis factor 1 isoform X1
KO
K13338
peroxin-1
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04146
Peroxisome
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
100626142 (PEX1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssc04131
]
100626142 (PEX1)
Membrane trafficking [BR:
ssc04131
]
Autophagy
Pexophagy
Other pexophagy associated proteins
100626142 (PEX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
PEX-2N
PEX-1N
AAA_lid_3
AAA_16
AAA_14
nSTAND3
RuvB_N
AAA_33
AAA_22
AAA_5
ABC_tran
TIP49
AAA_28
DUF815
AAA_29
Sigma54_activ_2
NPHP3_N
IstB_IS21
AAA_7
AAA_19
Mg_chelatase
NB-ARC
AAA_2
Viral_helicase1
Phage_Coat_A
CoaE
APS_kinase
Vps4_C
ORC-CDC6-like
Motif
Other DBs
NCBI-GeneID:
100626142
NCBI-ProteinID:
XP_003357485
Ensembl:
ENSSSCG00000029967
LinkDB
All DBs
Position
9:complement(72385755..72444718)
Genome browser
AA seq
1322 aa
AA seq
DB search
MRRGALGGGADRSSPGPTPATCGVGPGKIGWAAGGRCLQTMWGGDRLAGAGGGGAAVTVA
FTNARDCFLHLPRRLVAQLHLLQNQAIEVTWGQQPAFLSWVEGRHFRDQGENVAEINRQV
GQKLGLSNGEQVFLKPCSHVVSCQQVEVEPLSADDWEILELHAASLEQHLLDQIRIVFPK
AIFPIWVDQQTYVFIQIVALIPGASYGRLETDSRLLIQPKTRQAKENTFSKGDNARGKFH
NYEGNQKGLTKEPQTKQLQSNTIGITRSQETDSKDTIDASSVPSLWTMIGSIFSFGSEKK
QDMSWGLTEINAFKNMQSEVVPLDNIFRVCKSQPPSICNASPTSVFHKHYTIHVFPWDQE
YFDVEPSFTVTYGKLAKVLSPKQQQNKTKQSVLSPEKEKQMSEPLDQKQISPDSSQEDDK
ACVLKVVWNGLEELKNAVKYTKNVEALHLGKVWIPDDLRKRLNIEMHAVVRITPVEITPK
IPRSLTLQPRENLPEDVSEEDIKAVFSSWLQQSTTTTLPLIISEEEYIKLEIKDGLKEFS
LNTAHSWEKEKEKNIFLLSANLLQKTTIQVLLDPMVKEENSEEIDFILPFLKLNCLGGVN
SIGVSSMEHITHSLLGRPLSRQLMSLMAGLRNGALLLTGGKGSGKSTLAKAICKEAFDVL
DAHVEIVDCKALRGKRLENLQKTIVAAFSEASWRQPSVVLLDDLDLVAGLPALPEHEHSP
EAVQSQRLAHALNDMTKELISMGSLVALIATSQSQHSLHPLLVSAQGIHLFQCVQHIQPP
DQEQRCEILHNAIKNKLDCDMNSFTDLDLKRIAKETEGFVARDFIVLVDRAIHSRLSNQS
VSTREELVLTTLDFQKALQGFVPASLRNVNLHKPRDLGWDHIGGLREVRQILMDTIQLPA
KYPELFANLPIRQRTGVLLYGPPGTGKTLLAGVVARESGMNFISVKGPELLSKYIGASEQ
AVRDIFIRAQAAKPCILFFDEFESIAPRRGHDNTGVTDRVVNQLLTQLDGVEGLQGVYVL
AATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILNVLSASLPLAEDVDLQHVASLTD
SFTGADLKALLYNAQLEALHGRLLSCGLQDGGSSSDSDLSLSSMVFLNHSSGSDDSAGDG
EYGLDQSLVSLEMSEVLPDESKINMYRLYFGSSYESELGNGTSSDLSSQCLSAPSSITQD
FPGAPGKDQFSRPPMFRTASQEGYQELTQEQRDQLRADISIIKSRYRNQIGEDDALNQPG
PIRTSLAISQSHLMTALSHTRPSISEDDWKNFAELYENFQNPKKRKNQSGTVFRPGQKVT
LA
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgcggggccttagggggcggggccgatcgatcgtctccgggtccgacgcccgcg
acctgcggggttggcccgggaaagataggttgggcggctgggggtcggtgcctgcagaca
atgtggggcggcgatcgcctggcgggtgctggcggaggcggggcggccgtgacggtggcc
ttcaccaacgctcgcgactgcttcctccacttgccgcggcgccttgtggcccagctacac
ctgctgcagaatcaagctatagaagtaacgtggggtcagcagcctgcattcttgagttgg
gtggaaggcaggcattttcgtgatcaaggtgaaaatgtggctgaaattaacagacaagtt
ggtcagaaacttggactctcaaatggggaacaggtgtttctcaagccatgttcccatgtg
gtgtcttgtcaacaagttgaagtggaacccctctcagcagatgattgggagatactggag
ctgcatgctgcttcccttgaacagcatcttctagatcaaattcgaatagtttttccaaag
gccatttttcccatttgggttgatcagcaaacttacgtatttatccagattgttgcacta
ataccaggggcgtcttatggaaggctggaaactgacagcagactccttattcagccaaag
actcgccaagccaaagagaatacattttcaaaaggagataatgcacggggaaaatttcat
aattatgaaggaaaccaaaaaggattgacaaaagaacctcaaaccaagcaacttcagtca
aatactataggaatcactaggtctcaagaaacagattcaaaggatacaattgacgcatcc
tcagtgccaagcttatggactatgataggaagtattttttcgtttgggtctgaaaagaaa
caagacatgtcctggggtttaactgaaatcaatgcattcaaaaatatgcagtcagaagtt
gttcctttggacaatattttcagagtatgcaaatctcagcctcccagcatatgtaatgca
tccccaacttctgtgtttcacaaacactacaccattcatgtatttccatgggaccaggaa
tattttgatgtggagcccagctttactgtgacctatggaaagctagctaaagtactttct
ccaaagcaacagcaaaataaaacaaagcaaagtgtcctgtcacctgaaaaagagaagcag
atgtcagaaccactagatcaaaaacaaattagcccggactctagtcaagaagatgacaag
gcctgcgtgctaaaggtggtctggaatggacttgaggaattgaagaatgccgttaaatac
accaagaatgtagaagctcttcatcttgggaaagtctggattccagatgacctgagaaag
agactaaatatagaaatgcatgcagtagtcagaataactccagtggaaattacccctaaa
attccaagatctctaacattacaacctagagaaaacttacctgaagacgtaagtgaagaa
gacataaaagctgtgttctcttcatggttacaacagtccactactaccacacttcctttg
ataatatcagaggaagaatatattaagctggaaattaaagatggattgaaggagttttct
ctgaatacagctcattcttgggaaaaggaaaaagaaaaaaatatttttctattgagtgcc
aatctgctacagaagactacaatacaagtccttctagatcctatggtaaaagaagaaaac
agtgaggaaattgactttattcttccttttttaaagctgaactgcctgggaggagtgaat
tccataggcgtctcctccatggagcacatcactcacagcctcctgggacgccctttgtct
cggcagctgatgtccctcatggcaggacttaggaatggcgcccttttactcacaggagga
aaggggagtggaaaatcaactttagcgaaggcaatctgtaaagaagcgtttgacgtattg
gatgcccatgtggagatagttgactgtaaagctttacgaggaaaaaggcttgaaaaccta
caaaaaaccatagtggcggctttctcagaggcatcgtggaggcagccttctgttgttctg
ctggacgacctggatctggttgcgggcctgcctgccctcccggaacatgagcatagtcct
gaggctgtgcagagccagaggctggcacatgccttgaatgatatgacgaaagagttaatt
tccatgggaagtttggttgcactgattgctacaagccagtctcagcattctctacatcct
ttacttgtttctgctcaaggaattcacctgtttcagtgcgtccagcacatacagcctcct
gatcaggagcaaagatgtgaaattctgcataatgccataaaaaataaactggactgtgat
atgaacagtttcactgatcttgacctgaaacgtatagctaaagagactgaaggctttgtg
gctagagactttatagtgcttgtggatcgagccatacattctcgtctctctaatcagagt
gtatctaccagagaagaattagttttaacaacattggacttccaaaaggctctccaagga
tttgttcctgcatctctgagaaatgtcaacctacataaacctagggacctgggctgggat
cacattggtggattacgtgaagttcggcagatccttatggatacaatccagttaccagcc
aagtacccagagttatttgcaaacttgcccatacgacaaagaacaggagtactactgtat
ggtcctcctggaacgggaaaaaccttactagctggagtagttgcacgagagagtggaatg
aattttattagtgttaaggggccagagttactcagcaaatatattggagcaagtgaacaa
gctgttcgggatatttttattagagcacaggctgcgaagccctgcattcttttctttgat
gaatttgaatccatcgctcctcgacgaggccatgataatacaggggtcacagaccgtgta
gttaaccagttgctgactcagttggatggagtagaaggcttacagggtgtttatgttttg
gctgctaccagtcgccctgacttgattgaccctgccctgctgaggcctggccgactggat
aaatgcgtctactgccctcctcctgatcaggtgtcacgtcttgaaattttaaatgttctc
agtgcctctctacctctggcagaggacgtggatcttcagcacgtggcatccctaactgac
tccttcacgggagctgatctgaaagccttactttacaatgcccagctggaggccttgcat
ggaaggctgctgtcctgtggactccaagatggagggtccagctctgatagtgacctgagt
ctgtcttcaatggtttttcttaaccacagcagtggctctgatgattcagctggagatgga
gaatatggcttagaccagtcccttgtttctctagagatgtcagaggtgcttccagatgaa
tcaaaaatcaatatgtaccggctctactttggaagctcctacgaatcagaacttgggaac
gggacctcttcagatttgagctcgcaatgcctgtcagcaccaagctccataactcaggat
tttcctggagctcctgggaaggatcagttttcacgacctccaatgttcagaacagcttca
caagagggttatcaagaactcacacaggaacaaagagatcaactgagggcggatatcagt
attatcaaaagcagataccggaaccaaattggagaggatgatgcccttaaccaaccagga
ccaatcagaaccagtctggctattagtcagtcacatttaatgactgcactcagtcacaca
aggccatccatcagtgaggatgactggaagaacttcgctgagctgtatgaaaattttcaa
aatccaaagaagagaaaaaatcaaagtggaacagtgttccgacctggacagaaagtaact
ctagcataa
DBGET
integrated database retrieval system
