Sus scrofa (pig): 100626354
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Entry
100626354 CDS
T01009
Symbol
CDH4
Name
(RefSeq) cadherin-4 isoform X1
KO
K06797
cadherin 4, type 1, R-cadherin
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
100626354 (CDH4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssc04515
]
100626354 (CDH4)
Cell adhesion molecules [BR:
ssc04515
]
Cadherins
Major cadherins
100626354 (CDH4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_pro
CADH_Y-type_LIR
DUF2304
Cadherin_4
Stevor
Motif
Other DBs
NCBI-GeneID:
100626354
NCBI-ProteinID:
XP_020933864
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All DBs
Position
17:60959236..61454154
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AA seq
913 aa
AA seq
DB search
MTAGSGVFLVLLSLSGALRAHNGGLTARETCKAGFSEDDYTALISQNILEGEKVLKVKFS
SCLGTKGTQYETNSLDFKVGADGTVFATRELQIPSEQVAFTVTAWDRQTAERWDAVVRLL
VAQTSSAHSGHKRGKKSAAPGPAQPPSDTPLPWPQHQSAHGLRRQKRDWVIPPINVPENS
RGPFPQQLVRIRSDKDNDIPIRYSVTGVGADQPPMEVFSIDSMSGRMYVTRPMDREERAS
YHLRAHAVDMNGNKVENPIDLYIYVIDMNDNRPEFLNQLYNGSVDEGSKPGTYVMTVTAN
DADDGTTANGMVRYRIVTQTPQSPSQNMFTINSETGDIVTVAAGLDREKVQQYTVIIQAT
DMEGNLNYGLSNTATAIITVTDVNDNPPEFTASTYAGEVPENRVETVVANLTVVDRDQPH
SPNWNAVYRIISGDPSGHFSIRTDPVTNEGMVTVAKAVDYELNRAFMLTVMVSNQAPLAS
GIQMSFQSTAGVTISVVDINEAPYFPSNHKLIRLEEGVPSGTVLTTFSAVDPDRFMQQAV
RYSKLSDPANWLHVNATNGQISTAAVLDRESLYIKNNVYEATFLAADNGVPPASGTGTLQ
IYLIDINDNAPELLPKEAQICERPSLTAINITAADADVDPNVGPYVFELPFVPASVRRNW
TISRLNGDYAQLSLRILYLEAGMYDVPITVTDSGNPPLSNTSVIKVKVCPCDENGDCTAI
GAVAAAGLGTGAIVAILLCIVILLTMVLLFVLWMKRREKERHTKQLLIDPEDDVRDNILK
YDEEGGGEEDQDYDLSQLQQPEAMEHVLSKAPGVRRVDERPVGAEPQYPVRPVVPHPGDI
GDFINEGLRAADNDPTAPPYDSLLVFDYEGSGSTAGSVSSLNSSSSGDQDYDYLNDWGPR
FKKLADMYGGGED
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcgggctccggcgtgtttctagtgctgctctcgctctccggcgcgctccgggcc
cacaatgggggtctcactgccagggagacctgcaaggctggattctctgaagacgactac
acagcattaatctcccaaaacattctggaaggagagaaggtcctcaaagtcaagttcagc
agctgcctggggaccaaggggacgcaatatgagaccaacagcctggacttcaaagtcggg
gccgacgggaccgtcttcgccacccgggagctgcagatcccctcggagcaggtggccttc
actgtgaccgcgtgggaccgccagacggccgagcgatgggacgccgtggtgcgcctgctg
gtggcccagacctcgtccgcgcactccggacacaagagaggcaagaagagtgccgccccg
ggccctgcccagcctccgagtgacacgccgttgccgtggccccagcaccagagcgcccac
gggctgaggcggcagaagcgggactgggtcatcccgcccatcaacgtgccggaaaactcc
cgcgggcccttcccgcagcagctggtgaggatccgctcggacaaggacaacgatatcccc
atccggtacagcgtcacgggcgtgggcgccgaccagccccccatggaggtcttcagcatc
gactccatgtccggccgcatgtatgtcacgcggcccatggaccgggaggagcgagcctcc
taccacctccgggcgcacgcggtggacatgaacggcaacaaggtggagaaccccatcgac
ctgtacatctacgtcatcgacatgaacgacaaccggcctgagttcctcaaccagctgtac
aacggctccgtggacgagggctccaagccaggcacttacgtgatgacggtcacggccaac
gacgccgacgacggcaccacggccaacgggatggtgcggtaccggatcgtgacccagacc
ccgcagagcccctcccagaacatgttcaccatcaacagcgagacgggggacatcgtgacg
gtggccgccggcctggaccgcgagaaagtccagcagtacacagtcatcatccaggccacc
gacatggagggaaacctcaactacggcctctcgaacacggccaccgccatcatcacggtg
acggacgtgaacgacaacccgccggagttcaccgccagcacgtacgcaggcgaagtgcct
gaaaaccgggtggagacggtggtggcaaacctgaccgtggtcgaccgagatcagcctcac
tccccaaactggaacgccgtctaccgcatcatcagtggggacccttcgggccacttcagc
atccgcacagaccccgtcaccaacgagggcatggtcaccgtagcgaaggcggtcgactac
gagctgaacagagccttcatgctgaccgtgatggtgtccaaccaggcgcccctggccagc
ggcatccagatgtcgttccagtccacggcgggggtgaccatctcggtcgtggacatcaac
gaggccccctacttcccctcgaaccacaagctcatccgcctggaggagggcgtgccctcc
ggcaccgtgctgaccaccttctcggcggtggaccccgaccggttcatgcagcaggccgtg
agatactcgaagctgtcggaccccgctaactggctgcacgttaacgccaccaacggccag
atcagcacggcggccgtcctcgaccgagagtctctctacatcaaaaacaacgtctacgag
gccaccttcctggcggctgacaacggggtccccccggccagcggcaccggcaccctccag
atctacctcatcgacatcaacgacaacgcccccgagctgctgcccaaggaggcgcagatc
tgcgagaggcccagcctgaccgccatcaacatcaccgcggctgacgccgacgtggacccc
aacgtcggcccctacgtcttcgagctgcccttcgtcccggcgagcgtgcgcaggaactgg
accatctcccgcctaaacggtgactacgcccagctcagcctccgcatcctgtacctggag
gccgggatgtacgatgtccccatcactgtcacggactcgggaaacccgcccctgtccaac
acgtctgtcatcaaggtcaaggtgtgcccgtgcgacgagaacggcgactgcactgccatc
ggcgcggtggcggcggcgggtctgggcacgggcgccatcgtggccatcctcctctgcatc
gtcatcctgctgaccatggtgctgctgttcgtgctgtggatgaagcggcgggagaaggag
cgccacacgaagcagctgctcatcgaccccgaggacgacgtgcgcgacaacatcctcaag
tatgacgaggagggcggcggcgaggaggaccaggactacgacctcagccagctgcagcag
ccggaggccatggagcacgtgctgagcaaggcccccggggtgcggcgggtggacgagcgg
cccgtgggcgccgagccccagtacccggtcaggcctgtggtgccccacccgggggacatc
ggcgacttcatcaacgagggactccgggcggcagacaacgaccccacggcgcccccctac
gactccctgctggtcttcgactacgaggggagcggctccacggccggctcggtcagctcc
ctgaactcgtccagctccggggaccaggactacgactacctgaacgactgggggcccagg
ttcaagaagctggcggacatgtacgggggtggcgaggactag
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