Sus scrofa (pig): 100626940
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Entry
100626940 CDS
T01009
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
100626940 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ssc01009
]
100626940 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssc04515
]
100626940 (PCDH1)
Protein phosphatases and associated proteins [BR:
ssc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100626940 (PCDH1)
Cell adhesion molecules [BR:
ssc04515
]
Cadherins
Protocadherins
100626940 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
100626940
NCBI-ProteinID:
XP_020940598
UniProt:
A0A480I0V4
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All DBs
Position
2:complement(143475931..143501204)
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AA seq
1237 aa
AA seq
DB search
MDCRARGRRCPEAAFLTLEPARMGPPRRSPGPAGHRLLLAPLLLALLLLLAPSPGHATRV
VYKVPEEQPPNTLIGSLAADYGFPDVGHLYKLEVGAPYLRVDGKTGDIFTTETSIDREGL
RECQNQLPGEPCILEFEVSITDLVQNGSPRLLEGQIEVQDINDNTPNFASPVITLPIPEN
TNIGSLFSIPVASDRDAGPNGVASYELQAGPEAQELFGLQVAEDQEGKQPQLIVMGNLDR
ERWDSYDLTIKVQDGGNPPRASSALLRVTVLDTNDNAPKFERPSYEAELSENSPIGHSVV
QVKANDSDQGANAEIDYTFHQAPEVVRRLLRLDRNTGLITVQGPVDREDLSTLRFSVLAK
DRGTNPKSARAQVVVTVKDMNDNAPSIEIRGIGLVTHQDGMANISEDVAEETAVALVQVS
DRDEGENAAVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYEKVQDYTIEIVAVD
SGNPPLSSTNSLKVQVVDVNDNAPVFTQSVTEVAFPENNKPGEVVAEVTASDADSGSNAE
LVYSLEPEPAAKGLFTISPETGEIRVRTSLDREQRDSYELKVVAADRGSPSLQGTATVLV
NVLDCNDNDPKFMLSGYNFSVMENMPALSPVGMVTVIDGDKGENARVQLTVEQDNGDFVI
QNGTGTILSSLSFDREQQSTYTFQLKAVDGGVPPRSAYVGVTINVLDENDNAPFITAPSN
TSHRLLTPQTRLGETVSQVTAEDIDSGVNAELTYSIAGGNPYGLFQIGSHSGAITLEKEI
ERRHHGLHRLVVKVSDRGKPPRYGTALVHLYVNETLANRTLLETLLGHSLDTPLDIDIAG
DPEYERSKQRGNILFGVVAGVVAVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPK
PSSKVSKGSKSKGKKSKSPKPAKPVEDEDEAGLQKSLKFNLMSDAPGDSPRIHLPLNYPP
GSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPPANTFVGTGDTTSTGSEQYSDY
SYRTNPPKYPSKQLPHRRVTFSATSQAQELQDPSQHSYYDSGLEESETPSSKSSSGPRLG
PLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECSEFGHSDTCWMPGQSS
PSRRTKSSALKLSTFVPYQDRGGQEPAGAGSPSPPEDRNTKTAPVRLLPSYSAFSHSSHD
SCKDSATLEEIPLTQTSDFPPAATPASAQTAKREIYL
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggactgcagggcccgcggccggcgctgccccgaggcggccttcctgaccctggagcct
gcccggatggggcccccgaggcgcagcccaggcccggcggggcaccggctgctgctggcc
cccttgctgctggccctgctgctcctgctggctccatcccccggccacgccactcgggtg
gtgtacaaggtgccggaggagcagccgcccaacaccctcatcgggagcctcgcggccgac
tacggctttccagacgtgggccacctgtacaaactagaggtaggcgccccgtacctgcgg
gtggatggcaagacgggcgacatcttcaccaccgagacgtctatcgaccgcgaggggctc
cgcgagtgccagaaccagctccccggggagccgtgcatcctggagtttgaggtgtccatc
acggacctcgtgcagaacggcagcccccggctgctggagggccagatagaggtacaggac
atcaacgacaacacgcccaacttcgcctcgccggtcatcacgctgcccatccccgagaac
acaaacatcggctccctcttctccatcccagtggcttcggaccgggatgctggccccaac
ggcgtggcatcctacgagctgcaggccgggcccgaggcccaggagctgtttgggctgcag
gtggcagaggaccaggaggggaagcagccacagctcatcgtgatgggcaacctggaccgg
gagcgctgggactcctacgacctgaccatcaaggtgcaggatggtggcaacccgccgcgt
gccagcagcgccctgctgcgcgtcactgtgctcgacaccaatgacaacgcccccaagttc
gagcggccctcctacgaggccgagctgtctgagaacagccccataggccactcggtcgtg
caggtgaaggccaatgactcagaccaaggggccaacgcggagattgactacacgttccac
caggcgcccgaagtggtgaggcgcctgctgcgactggacaggaacacgggcctcatcacg
gtccagggcccggtggaccgcgaggacctgagcaccctgcgcttctcggtgctcgccaag
gaccgcggcaccaaccccaagagcgcccgggcgcaggtggtggtgaccgtgaaagacatg
aacgacaacgcccccagcatcgagatccgcggcatcgggctggtgacccaccaggacggg
atggccaacatctccgaggacgtggcggaggagacagccgtggccctggtgcaggtgtcg
gaccgagacgagggagagaatgccgctgtcacctgcgtggtggcgggcgacgtgcccttc
cagctccgccaggccagcgagacggggagcgacagcaagaagaagtacttcctgcagacg
accaccccgctcgactacgagaaggtccaggactacaccatcgagattgtggccgtggac
tcgggcaacccccccctctcgagcaccaactccctcaaggtgcaggtggtggacgtcaac
gacaacgcccccgtcttcacccagagcgtcaccgaggtcgccttcccggaaaacaacaag
ccgggggaagtggtggccgaggtcaccgccagcgacgcggactcgggctccaacgccgag
ctggtttactctctggagcccgagccggccgccaagggcctcttcaccatctcccccgag
accggcgagatccgggtgaggacgtcgctcgatcgcgagcagcgcgacagctacgagctg
aaggtggtggcggccgaccgcggcagccccagcctccagggcacagccaccgtgctcgtc
aacgtgctggactgcaacgacaatgaccccaagtttatgctgagtggctacaacttctcg
gtgatggagaacatgccggcgctgagtccggtgggcatggtgaccgtcattgacggggac
aagggggagaacgcccgggtgcagctcacggttgagcaggacaacggcgacttcgtcatc
cagaatggcacgggcaccatcctgtccagtctgagctttgaccgggagcagcagagcacc
tacaccttccagctgaaggcggtggacggcggcgtccccccgcgctccgcctatgtcggc
gtcaccatcaacgtgctggatgagaacgacaacgcgcccttcatcaccgccccttccaac
acctcccaccggctgctgaccccccagacccggctgggggagacggtcagccaggtgacg
gcggaggacatcgactccggtgtcaacgctgagctgacctacagcatcgccggcggcaac
ccgtacggcctcttccagatcgggtcacattccggggccatcaccctggagaaggagatc
gagcggcgccaccacgggctgcaccgcttagtggtgaaggtcagtgaccggggcaagccg
ccgcgctacggcacagccctggtccacctctacgtcaacgagaccctggccaaccgcacg
ctgctggagaccctgctgggccacagcctggacaccccgctggacatcgacattgccggg
gacccagaatacgagcgctccaagcagcgcggcaacatcctcttcggcgtggtggccggc
gtggtggccgtggccctgctcatcgccttggccgtgctcgtgcgctactgccggcagcgg
gaggccaagagtggctaccaggccggcaagaaggagaccaaggacctgtacgcgcccaag
cccagcagcaaggtttccaagggcagcaaaagcaagggcaagaagagcaagtctcccaag
cccgcgaagcccgtggaggacgaggacgaggccggcctgcagaagtccctcaagttcaac
ctgatgagcgacgcgcccggggacagcccccgcatccacctgcccctcaactacccgcca
ggcagcccggacctgggccgccactaccgctccaactccccgctgccctccatccagctc
cagccccagtcgccctccgcctccaagaagcaccaggtggtgcaggacctgccgccggcg
aacacgttcgtgggcaccggggacaccacgtccacgggctctgagcagtactccgactac
agctaccgcaccaacccccccaaataccccagcaagcagttacctcaccgtcgcgtcacc
ttctccgccaccagccaggcccaggagctccaggacccgtcccagcacagttactacgat
agcggcctggaggagtctgagacgccgtccagcaagtcgtcctcggggccccgactcggt
cccctggctctgcccgaggatcactacgagcgcaccacccccgacggcagcataggagag
atggagcaccccgagaacgacctgcgccctctgcccgacgtcgccatgacgggcacgtgc
acccgggaatgcagcgagtttggccactccgacacctgctggatgcccggccagtcgtct
cccagccgccggaccaagagcagcgccctcaaactctccaccttcgtgccttaccaggac
cggggagggcaggagcctgcgggcgccggcagccccagccccccggaagaccggaacacc
aaaacggcccccgtgcgcctcctgccctcctacagtgccttctcccacagtagccatgac
tcctgcaaggactcggccaccttggaggagatccccctgacccagacctcggacttccca
cccgcagccacaccggcatccgcccagacggccaagcgcgagatctacctgtga
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