Sus scrofa (pig): 100627258
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Entry
100627258 CDS
T01009
Symbol
SCAF4
Name
(RefSeq) splicing factor, arginine/serine-rich 15 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssc03021
]
100627258 (SCAF4)
03041 Spliceosome [BR:
ssc03041
]
100627258 (SCAF4)
Transcription machinery [BR:
ssc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100627258 (SCAF4)
Spliceosome [BR:
ssc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
100627258 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
100627258
NCBI-ProteinID:
XP_003358973
Ensembl:
ENSSSCG00000021023
UniProt:
A0A8D1CYX7
LinkDB
All DBs
Position
13:complement(195335178..195396246)
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AA seq
1154 aa
AA seq
DB search
MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGTSNAAPVAENVTNNEGSPPPPVKVSSELPQATTNSVPTVPQLP
SSDAFAAVAQLFQSTQGQQLQQILQTFQQPPKPQSPAIDNAVMAQVQAITAQLKTAPTQP
PEQKAAFPPPEQKTAFDKKLLDRFDYDDEPEAVEESKKEDTAAAATATAAATTAPPTPAA
PPAPVAAVPAAAAAAAAATAASPPQAPFGFPGDGMQQPAYTQHQNMDQFQPRMMTIQQDP
VHHQVPLPPNGQMPGFGLLPTPPFPPMAQSVIPPTPPVQQPFQTSFQAQNEPLTQKAHQE
MEVEQPCIQEVKRHMSDNRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHS
PRSRSQERRDREKERERRQKGLPQIKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGP
IESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYW
DVELGVTYIPWDKVKPEELESFCEGGMLDSDTLNPDWKGIPKKHENEVAQNGGAETSHTE
PVSPIPKPLPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPTFTPPLGIPPPGFGP
GVPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNSTIAGINE
DTTKDLSIGNPIPTVVSGARGNAESGDSVKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQG
VAPGPVIGLQAPSTGLLGARPGLIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMHRGPPPG
PGGFGMPPPHGMKGPFPPHGPFVRPGGMPGLGGPGPGPGVPEDRDGRQQQPPPPQQQQQQ
QQQQQQPPPQPQPQQQPPPTQQPQPTQQQSQPFRNDNRQQFNSGRDQERFGRRSFGNRVE
NDRERYGNRNDERENSNRERREWGRRSPDRDRHRDLEERNRRSSGHRDRERDSRESRREK
EENRGKEKPEVTDRAGGNKTVEPPISQVGNVDTVSELDKGGAESAVVKPEELPAEATSSV
EPEKDSGSAAEAPR
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtcaacgccttcaaccaggagctcttttcacttatggatatgaaacctccc
atctctagagccaaaatgattctcatcacaaaagctgctattaaagctattaagctttat
aagcatgtagttcaaatagtagaaaagttcatcaaaaagtgtaaaccagaatacaaggtt
ccaggattatatgtaattgactcaattgtgcgacagtctcgtcatcagtttggaactgat
aaagatgtttttgggccaagattctctaaaaacataactgccacattccaatatttatat
ctttgtccatctgaagataagagtaaaattgttcgtgtactgaacctttggcaaaaaaat
ggagtattcaaaattgaaattattcagcctctcttggacatggcggcaggaaccagtaat
gccgcccccgttgcagaaaatgttactaataatgaaggttcacctccgccgccagttaaa
gtttcttctgaacttccacaagccactacaaactccgtaccaactgtaccacagttgccc
agctctgatgcatttgctgctgtggcccaactctttcagtcaactcaaggtcaacagctt
cagcagatccttcagacttttcagcagcctccaaaaccacagtctcccgccattgacaat
gctgtaatggcccaggttcaggctatcacagctcagttaaagacagctcctacacaaccg
cctgaacaaaaagctgctttccccccacctgaacaaaaaactgcatttgacaagaagcta
cttgatagatttgattacgatgatgagccagaagctgtggaagagtcaaagaaagaagac
actgctgctgctgccaccgccaccgccgccgccaccacagcacctcctacccctgctgca
ccgcctgcacctgttgctgccgtgcctgctgctgctgctgctgctgctgctgcaactgct
gcttctcctccacaggcaccctttggatttcctggagatggcatgcagcaaccagcatat
acccaacatcaaaacatggatcagtttcaaccgcgaatgatgacaatacagcaggatcca
gtgcaccatcaggttccacttcctcctaatggacagatgccaggatttggccttcttcct
acacctccatttcctcccatggctcagtccgtgattcctccaactccacccgtgcagcag
cctttccaaacttcctttcaggcgcagaatgagccactgacacaaaaggcacatcaggaa
atggaagtagaacaaccttgtattcaagaggtgaagcggcacatgtctgataacagaaag
tcgagatctagatcagcatccaggtcaccaaaaaggagacgctctcgatctggttctaga
tctcgaaggtcccgccatcgacgttctcgatcaaggtccagagatagacgcaggcattct
cctagatcccgatcccaagaaagacgggatcgagaaaaagaaagagaacgccgacaaaag
ggccttcctcaaattaagcctgaaactgcaagtgtgtgtagtactacactctgggtgggt
cagctggacaaaaggactactcagcaggatgttgccagtctcctagaagagtttggtcca
attgaatcaattaatatgattcctcccagaggttgtgcctatattgttatggttcatagg
caagatgcttatcgtgccctgcagaaactgagccgaggaaactataaagtgaaccagaaa
tccataaagattgcctgggccttaaacaaaggaataaaggcagattataagcagtattgg
gatgtagaacttggtgtgacttacattccatgggacaaagtcaagcctgaagaactggaa
agtttttgtgaaggaggaatgttggacagcgacacacttaatccagattggaagggaatt
cccaaaaagcatgaaaatgaagttgctcaaaatggaggggcagaaacctcacacacagaa
ccagtatcacccatacctaagcctttacctgtacctgtccctcctatccctgtgcctgca
cctataacagtaccacctccacaggtcccaccacatcagccgggacctcctgtagttggt
gctctccagccacccactttcacgcctcctttaggaattccgcctccaggctttggtcct
ggtgttcctcctcctccacctcctccgccatttttgcgcccaggattcaacccaatgcat
ttaccaccaggttttcttcctcctggacccccacctcctataactccaccagtatccatt
cctcctcctcacactccaccaataagcatcccaaactctactatcgctggtataaatgaa
gacactacaaaagacttatctattggaaatcccattccaacagtggtgtctggggctaga
ggaaacgccgagtctggtgacagtgtgaaaatgtatggctctgccgtgccacctgctgca
cccacgaatctgcctacccctcctgtaacccagcctgtctcacttcttggtactcaagga
gttgcacctggtcctgtaattgggctccaggccccatccactggtcttcttggtgcccga
cctggcctgatcccactccagcgcccaccaggaatgcctccacctcatttacaacgattt
cctttgatgccgcctcgtcccatgcctccgcacatgatgcatagaggtccaccgccagga
ccagggggctttggaatgcctccgcctcatggaatgaaaggtccctttccgccccatggc
ccctttgttcggcctggtggaatgccagggctcgggggcccaggcccaggcccaggggtt
cctgaagacagagatgggaggcagcaacagccgccaccaccacagcaacagcagcagcag
cagcagcagcagcagcagccgccaccacagccacagccacaacagcagccgccgccaact
cagcaaccacaaccaactcagcagcaatcacaaccatttagaaatgataacaggcagcag
ttcaattcaggtagagaccaagaaaggtttggaagaagatctttcggaaatagggtggaa
aatgaccgggaacggtatgggaaccgtaatgatgagagagagaatagtaatcgcgaaagg
agagagtggggaagaaggagccctgaccgggacaggcacagagacttggaagagaggaat
agacgctctagtgggcatcgagacagagagagagattctagagagtctcgtagagagaag
gaagaaaaccgaggcaaggaaaagcctgaggtgacagacagagcaggtggtaacaaaacc
gttgaacctcccattagccaagtgggaaatgtagacactgtttcagaacttgataagggg
ggggctgagtctgcagttgtaaaacctgaagagttacctgctgaggctacctcatccgtt
gaacccgaaaaggattctggctcagcagcagaggctcctcgttag
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