Sus scrofa (pig): 100627320
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Entry
100627320 CDS
T01009
Symbol
LSM1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100627320 (LSM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100627320 (LSM1)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100627320 (LSM1)
mRNA degradation factors
5'-3' decay
Lsm complex
100627320 (LSM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
100627320
NCBI-ProteinID:
XP_005671835
Ensembl:
ENSSSCG00000026787
UniProt:
A0A8D2BW03
A0A4X1VW00
LinkDB
All DBs
Position
15:48348653..48360004
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AA seq
133 aa
AA seq
DB search
MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIP
RGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQARLEAEKLKVQALKDR
GLSIPRADTLDEY
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaactatatgcccggcaccgctagcctcatcgaggacatcgacaaaaagcacttggtt
ctgcttcgagatggaaggacacttataggctttttaagaagcattgatcaatttgctaac
ttagtgctacatcagactgtggagcgtattcatgtgggcaaaaaatacggtgatattcct
cgagggatttttgtggtcagaggagaaaatgtggtcctactaggagaaatagacttagaa
aaggagagtgatacacccctccagcaagtgtctattgaagagatcctggaagaacagagg
gtggagcagcaggccaggctggaagccgagaagctgaaggtccaggcccttaaggaccga
ggcctctccatcccccgagcagatactctggatgagtattaa
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integrated database retrieval system
