Sus scrofa (pig): 100627404
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Entry
100627404 CDS
T01009
Symbol
DDX1
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssc03041
]
100627404 (DDX1)
03016 Transfer RNA biogenesis [BR:
ssc03016
]
100627404 (DDX1)
Enzymes [BR:
ssc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100627404 (DDX1)
Spliceosome [BR:
ssc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
100627404 (DDX1)
Transfer RNA biogenesis [BR:
ssc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
100627404 (DDX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Motif
Other DBs
NCBI-GeneID:
100627404
NCBI-ProteinID:
XP_020943481
Ensembl:
ENSSSCG00000008619
LinkDB
All DBs
Position
3:complement(121818400..121856667)
Genome browser
AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
GCRATKGLTKGKHYYEVSCHDQGLCRVGWSSMQASLDLGTDKFGFGFGGTGKKSHNKQFD
NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF
NFGEEEFKFPPKDGFVALSKASDSFVVKSQHSGNAQVAQTKFLPNAPKALIVEPSRELAE
QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTGKLN
LSQVRFXVLDEADGLLSQGYSDFINRIHNQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKNHIRTDEVHAKDNTRPGAN
SPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQF
SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS
EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRTLGGGNYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggccttctccgagatgggtgttatgcctgagattgcacaagccgtggaagagatg
gattggctcctcccaactgatattcaggctgagtcgatcccactgatcctgggaggaggt
gatgtactcatggctgcagaaacaggaagtggaaaaactggtgctttcagtattccagtt
atccagatagtttatgaaactctgaaagaccaacaggaaggcaaaaaaggaaaaacgaca
attaaaactggtgcttcagtgctgaacaaatggcaaatgaacccatacgatagaggatct
gcttttgcaattgggtcagatggtctttgttgtcaaagcagagaagtaaaggagtggcat
ggatgtagagctactaaaggattgacgaaagggaaacactactatgaagtatcctgtcac
gaccaaggattgtgcagggttggctggtcttctatgcaggcttccctagacctaggtact
gacaagtttggatttggctttggtggaacaggaaagaagtcccacaataaacaatttgat
aattatggagaggaattcactatgcatgataccattggatgttacctagatatagataaa
ggccatgtcaaattctccaaaaatgggaaagaccttggtctggcatttgaaataccacca
catatgaagaaccaagccctctttcccgcttgtgttttgaagaatgctgaactaaaattt
aacttcggagaagaagaatttaagtttccaccaaaagacggttttgttgccctttccaag
gcatcggatagcttcgttgtcaagtcacagcactcaggtaatgcgcaggtggctcagacc
aagtttctccccaatgctccgaaagctctcatcgtggaaccttcccgagagttggctgag
caaactttgaataacatcaagcagtttaagaaatacattgataatcctaaattaagggag
cttctgataattggaggtgttgcagcacgagatcagctctctgttttagataatggggtg
gatatagtggttggcactccggggagactggatgatttggtgtcaactggaaagctgaac
ttatcccaagtcagattcntggtcctggatgaagctgacgggcttctttctcaaggttac
tctgattttataaataggattcacaatcagattcctcagattacctctgatggcaaaaga
cttcaggtaattgtctgctcagccactttgcattcttttgatgtgaagaaattgtctgag
aagataatgcattttcccacctgggttgatttaaaaggagaggattccgttccagacacc
gtacatcacgttgttgtcccagtgaaccccaaaactgacaggctctgggaacggcttggg
aaaaaccacattagaactgatgaagtacatgcaaaagataacacaagacctggtgctaac
agtccagagatgtggtctgaagctattaaaatcctgaagggagagtatactgtccgagcc
atcaaggaacacaagatggatcaagcaattattttctgtagaaccaaaatcgactgtgat
aacttggagcaatattttatgcaacaaggaggaggacctgataaaaaaggacaccagttc
tcatgtgtttgtcttcatggggacagaaagcctcatgagaggaagcaaaacttggaaaga
ttcaagaaaggagacgtaagattcctgatttgcacagatgtagctgccagaggaatcgat
atccatggtgttccttatgttataaatgtcactttgcctgatgaaaagcaaaactatgtt
catcgaattggcagagtaggaagagctgaaaggatgggtctggccatttccttggtggca
acagaaaaagagaaggtttggtaccatgtatgcagcagccgtggaaaggggtgttataac
acaagactcaaggaggacggaggctgtaccatatggtacaatgaaatgcagttgctctct
gagatagaagaacatctgaactgtacaatttctcaggttgagccagatataaaggtacca
gtggatgaatttgatgggaaagttacttatggtcaaaaaagaactcttggtggtggaaac
tataaaggccatgtggatatcttggcacctacagttcaagagttggctgcccttgaaaag
gaggcacagacatctttcctgcatcttggctaccttcctaaccagctgttcagaaccttc
tga
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