Sus scrofa (pig): 100627820
Help
Entry
100627820 CDS
T01009
Symbol
PABPC4L
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03015
mRNA surveillance pathway
ssc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100627820 (PABPC4L)
09123 Folding, sorting and degradation
03018 RNA degradation
100627820 (PABPC4L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100627820 (PABPC4L)
03041 Spliceosome [BR:
ssc03041
]
100627820 (PABPC4L)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100627820 (PABPC4L)
mRNA cycle factors
Stress granule specific factors
100627820 (PABPC4L)
Spliceosome [BR:
ssc03041
]
Complex C
Other components
Complex C specific factors
100627820 (PABPC4L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_Nup35
RBD_DEAH11
RRM_7
RRM_10
RRM_occluded
RRM_MARF1
Nup35_RRM_2
RRM_3
DUF4523
RBD_RDR6
Motif
Other DBs
NCBI-GeneID:
100627820
NCBI-ProteinID:
XP_020957249
LinkDB
All DBs
Position
8:92234165..92237309
Genome browser
AA seq
399 aa
AA seq
DB search
MNPGQSVIWPHAEIAPRALYRLAVVRSEEMNIAAKYRQASLYVGDLHADVTEDLLFKKFS
TVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDTMNFDLIKGKSIRLMWSQRDAY
LRKSGIGNVFIKNLDKSXDNKTLYEHFSAFGKILSSKVMSDDQGSRGYAFVHFQNQIAAD
RAIEEMNGALLKDCRLFVGRFKNRKDREAELQNKANEFTNVYIKNFGDDMDDERLKEVFS
KYGKTLSVKVMRDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAER
QAELKQMFEQLKRERFRRCQGVKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQEEGRS
KGFGLICFSSPEEATKAMTEMNGRILGSKPLNIALAQKP
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgaacccaggccaaagtgtgatctggccacatgcagaaatcgctccaagagctctttac
cgacttgcggtggtgaggagcgaggagatgaatatagcagccaagtaccgccaggcctcc
ctgtacgtgggtgacctccatgcggatgtcactgaggacctgctgttcaagaaattcagc
actgtggggcccgtgctgtccatccgcatctgcagggacctggtcacccgacgttctctg
ggctatgcctacgtgaatttcctgcagctggcagatgcccagaaggccctggacaccatg
aattttgacctgataaaaggcaaatccatccgtctcatgtggtctcaacgtgatgcctac
ttaaggaaatctggaattgggaacgtgttcatcaagaatctggacaaatccnatgataat
aaaaccctttatgaacatttttcagcttttgggaaaatcctgtcctccaaggtgatgagt
gatgatcagggctccaggggctatgcatttgtgcactttcagaaccagattgctgcagat
agagccatcgaggagatgaatggggcactgcttaaagactgcaggctatttgttggcaga
ttcaaaaaccgcaaagatcgagaagcagagcttcaaaacaaagccaatgagttcaccaat
gtttacatcaaaaacttcggagatgacatggatgatgagagactgaaggaagttttcagc
aaatatggcaaaaccttgagtgttaaggtgatgagagattccagtgggaaatccaaaggc
tttggctttgtgagttttgatagccatgaggctgccaaaaaggctgttgaagaaatgaat
ggaaaggacataaatggacagctgctttttgtaggccgggcacaaaagaaagcagagcga
caggctgagttaaagcaaatgtttgagcagctgaaacgtgaaaggtttcgccggtgccag
ggggtaaagctctatattaagaacttggatgagaccattgatgatgaaaaactacggagg
gaattttcttcatttggatcaattagcagagttaaggtaatgcaggaagaagggcgaagc
aaagggtttggcttgatctgcttctcctctcctgaggaggccactaaagcgatgactgag
atgaatggccgcatcttgggctctaagccactcaatatcgccctggcccagaagccctag
DBGET
integrated database retrieval system
