Sus scrofa (pig): 100737091
Help
Entry
100737091 CDS
T01009
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04151
PI3K-Akt signaling pathway
ssc04510
Focal adhesion
ssc04512
ECM-receptor interaction
ssc04820
Cytoskeleton in muscle cells
ssc04926
Relaxin signaling pathway
ssc04933
AGE-RAGE signaling pathway in diabetic complications
ssc04974
Protein digestion and absorption
ssc05146
Amoebiasis
ssc05165
Human papillomavirus infection
ssc05200
Pathways in cancer
ssc05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100737091 (COL4A5)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100737091 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100737091 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100737091 (COL4A5)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
100737091 (COL4A5)
09154 Digestive system
04974 Protein digestion and absorption
100737091 (COL4A5)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100737091 (COL4A5)
09162 Cancer: specific types
05222 Small cell lung cancer
100737091 (COL4A5)
09172 Infectious disease: viral
05165 Human papillomavirus infection
100737091 (COL4A5)
09174 Infectious disease: parasitic
05146 Amoebiasis
100737091 (COL4A5)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
100737091 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssc04147
]
100737091 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
ssc00536
]
100737091 (COL4A5)
Exosome [BR:
ssc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
100737091 (COL4A5)
Glycosaminoglycan binding proteins [BR:
ssc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100737091 (COL4A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
100737091
NCBI-ProteinID:
XP_020936437
UniProt:
A0A8D0QG97
A0A287A007
LinkDB
All DBs
Position
X:88958837..89183306
Genome browser
AA seq
1689 aa
AA seq
DB search
MKLRGVSLAAGLFLLALSLWGQPAEAAACSGCSPGSKCDCGGIKGEKGERGFPGLEGHPG
LPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQG
IPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGDPGYPGPPG
IQGPAGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGP
PGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGVKGEKGEQGEPGKRGKP
GKDGESGQPGIPGLPGDRGYPGAPGRDGEKGQKGDTGPTGPPGLVIPRPGVTIGEKGNIG
LPGLPGEKGERGFPGIQGPPGLPGPPGTAVMGPPGPPGFPGERGQKGDEGPPGISIPGSP
GLDGQPGAPGLPGPPGPPGPHVPPGDELCEAGPPGPPGSPGDRGLQGEQGVKGDKGDTCF
NCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGHAGATGPKGLIGIPGAPGAPGFPG
SKGEPGDILTFPGMKGEKGDLGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGER
GPPGNPGLPGLPGNRGPMGPIGFGPPGPVGEKGIQGVAGNPGQPGLPGPKGDPGQTITQP
GKPGLPGNPGRDGEVGLPGEPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPG
PPGAPGVPGRIGLEGPPGPPGFPGPKGEPGFGLPGPPGPPGLPGFKGILGPKGDRGFPGP
PGPPGHAGLDGLPGPKGDIGPNGQPGPIGPPGLPGTGAQGPPGPPGIPGPIGQPGLHGIP
GEKGDPGPPGFDVPGPPGERGSPGIPGAPGPMGPPGSPGIPGKAGASGFPGAKGEMGMMG
PPGPPGPLGIPGRSGVPGLKGDDGLQGQPGFPGPAGEKGSKGEPGLPGLPGPMDPDLLGS
KGEKGDPGLPGIPGVSGPKGYQGLPGDPGQPGLRGQPGLPGPSGPKGNPGLPGKPGLTGP
PGLKGNIGDMGFPGPQGAKGSLGSPGVPGQPGSPGLPGQKGEKGDPGISGIGLPGLPGPK
GEPGLPGYPGNPGIKGSIGDTGLPGLPGAPGAKGQPGLPGFPGTPGLPGPKGIDGPPGNP
GLPGEPGPVGGGGLPGLPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGLPGPPGLPGLSG
QKGDGGLPGIPGNPGLPGPKGEPGFHGFPGLQGPPGPPGSPGPALEGPKGNPGPQGPPGR
PGPPGFQGLPGPEGPRGLPGNGGFKGERGNPGQPGQPGLPGLKGDQGPPGLQGNPGRPGL
NGMKGDPGLPGVPGFPGMKGPSGAPGSPGPEGDPGLIGPPGPPGLPGPSGQSIVIKGDAG
PPGVPGQPGLKGLPGLPGPRGLPGPIGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRG
LDGPPGPDGLQGPPGPPGTSSVAHGFLITRHSQTTDAPLCPHGTTLVYEGFSLLYVQGNK
RAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMEPLKGQS
IQPFISRCAVCEAPAVVIAVHSQTIQIPRCPQGWDSLWIGYSFMMHTSAGAEGSGQALAS
PGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVDVSDMFSKPQSETLKAGDLRTRVS
RCQVCMKRT
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgcgtggagtcagccttgctgccggcttgttcttactggccctgagtctttgg
gggcagcccgcagaggctgcggcttgctctgggtgttctccaggatcaaagtgtgactgt
ggtggaataaaaggagaaaagggggagagaggatttccaggtttggaaggccatccaggt
ttgcctggatttccaggtccagaagggcctccagggcctcgaggacaaaagggtgatgat
ggaattccagggccaccaggaccaaaagggatcagaggtcctcctggacttcctggattt
ccagggacaccaggtcttcctggaatgccaggccatgatggggccccaggacctcaaggt
atccctggatgcaatggaaccaagggagaacgtggatttccaggcagtcccggttttccc
ggtttacagggacctccaggacctcctgggatcccaggtatgaagggagaacccggtagt
ataattatgtcatcgctaccaggaccaaagggtgatccaggatatccaggccctcctgga
atacaaggcccagctggtcccactggtatcccagggccaattggtcccccaggaccacca
ggtttgatgggccctcctggcccgccaggacttccaggaccaaaggggaacatgggctta
aatttccagggacccaagggtgaaaagggtgagcaaggtcttcagggcccccctgggcca
cctgggcagattagcgaacagaaaagaccaatcgatgtagagtttcagaaaggagatcag
ggccttcctggtgaccgggggcctcctggacctccagggatacgtggtcctccgggtcct
ccaggtggtgtgaaaggtgagaagggtgagcaaggagagcctggcaaaagaggtaaacca
ggcaaagatggagagagtggccaaccaggaattccaggtttgcctggtgatcgaggttac
cccggtgcaccaggaagggatggagaaaagggccaaaaaggtgacactggcccaactggg
cctcctggacttgtaattcctaggcctggtgtaactataggagaaaaaggaaatattggg
ttacctggcttgcctggagaaaaaggagagcgaggatttcctggaatacagggtccccct
ggccttcctggacctccagggactgcagttatgggtcctcctggaccccctggctttcct
ggggaaaggggccagaaaggtgatgaaggtccacctggaatttccatccctggctctcct
ggactcgatggacagcctggggctcctggcctcccaggacctcctggccctcctggccct
cacgtccctccgggtgatgaactgtgtgaagcaggccctcctggccctccaggatctccg
ggtgatagaggactccaaggagaacaaggagtgaaaggtgacaaaggtgacacctgcttc
aactgtattggaactggtatttcggggcctccaggtcaacctggtttgccaggtcttcca
gggcccccaggatcccttggtttccctggacagaagggtgaaaaaggacacgctggtgca
accggtcccaaaggattaataggcatcccaggagctccaggtgctccaggctttcctgga
tctaaaggtgaacctggtgacatcctcacttttccaggaatgaagggtgaaaaaggagac
ttgggttccccgggagctccagggcttcctggtttgcctggcacccctgggcaggatgga
ttgccagggcttcctggccccaaaggagaacctggtggaattacttttaagggtgaaaga
ggcccccctggaaacccaggtttgccaggtctcccaggaaatagggggcctatgggccct
atcggttttggccctccaggtccagtaggtgaaaaaggcatacaaggagtggcaggaaat
ccaggccagccaggactaccaggtcctaaaggcgatcccggtcagaccataacccaacca
gggaagcctggcctacctggtaacccaggcagagatggtgaagtaggtcttccaggtgaa
cctggactcccaggccagccaggcttgccaggaatacctggtagcaaaggagaaccaggt
attcctggaattgggcttccgggaccacctggtcccaaaggttttcctggaatcccagga
cctccaggagcacctggggtacctggaagaattggtctagaagggcctcctgggccacca
ggctttccaggacctaagggagaaccaggatttgggctacctgggccacccgggcctcca
ggactcccaggtttcaaaggaatacttggtccaaaaggagatcgtggtttcccaggacct
ccaggtcctccaggacacgctggcttggatgggctacctggaccaaaaggtgacattgga
ccaaatggacaacctgggccaataggacctcctgggctgccaggaacaggtgctcaggga
ccaccagggccaccagggattcctggaccaataggccaacctggcttgcatggaatacca
ggagagaagggggatccagggcctcctgggtttgatgtcccaggaccccctggtgagaga
ggcagtccagggattcctggagcaccaggtcctatgggacccccaggatcaccagggatc
ccaggaaaagcaggtgcctctggctttccaggtgccaaaggcgaaatgggtatgatggga
cctccaggccctccaggacctttgggaattcctggcaggagtggtgttcctggtctcaaa
ggtgatgatggtttgcagggtcagccaggatttcctggacctgcaggagaaaaaggtagc
aaaggagagcctggccttccaggccttcctggaccaatggatccagatctgctgggctca
aaaggagagaaaggagaccctggcctaccaggtattcctggagtttcagggcctaaaggt
tatcaaggtttgcctggagacccagggcaacctggattgcgtggacaacctggattacca
ggaccatcgggtcccaagggtaaccctggtctccctgggaagccaggacttacaggacct
cctggacttaaaggaaacataggtgatatgggttttccaggccctcagggtgcaaaaggg
tctcttggatctcctggagttcctggacaacccggctccccaggattacctggacagaaa
ggagaaaaaggtgatcctggtatttcaggcattggtcttccaggtcttcctggcccaaag
ggtgaacctggtctgcctggatacccggggaaccctggtattaaaggttctataggagat
actggtttgcctggattaccgggggcccctggagcaaaaggacaaccaggccttcctgga
ttccctggaaccccaggccttcctggaccaaaaggtattgatggcccccctgggaaccct
ggccttccaggagaacctggtcctgtaggtggtggaggtcttcctgggctaccaggtcct
ccaggagaaaaaggcaaaccaggtcaagatggtattcctggaccagctgggcagaagggt
gaaccaggtcaaccaggctttggactcccaggaccccctggactcccaggactttctggt
caaaagggtgatggaggattacctggcattccaggaaaccctggccttccaggtccaaag
ggtgaaccaggctttcatggtttccctggtctgcagggtcccccaggccctcctggttct
ccaggtccagctctggaaggccctaaaggcaaccctgggccccaaggtcctcctgggaga
ccaggtcctccaggttttcaaggtctgccaggcccagaaggtccccggggtctccctgga
aatggaggttttaaaggagagagaggaaacccaggccaacctgggcagcctggtttgcct
ggtttgaaaggagatcaaggaccaccaggactccagggtaatcctggccggccaggactc
aatggaatgaaaggggatcctggcctccctggtgttccaggttttccaggcatgaaagga
cccagtggagcacctggttcacctggccctgagggggatccaggccttattgggccccca
ggtccccctggattacctggtccttcaggacagagtattgtgatcaaaggagatgctggt
ccaccgggggtcccagggcagcctggattaaaaggtctaccaggactaccaggacctcga
ggtttaccaggtccaattggccctccaggagatcctggacgcaatggactccctggcttt
gatggtgcaggagggcgcaaaggagacccaggtttaccaggccagccaggtacccgtggt
ttggatggtccccctgggccagatggattgcaaggtcccccaggtccccctggaacctcc
tctgttgctcatggattccttatcacacgtcacagccagacaacagatgcaccactatgc
ccgcatggaacgaccctggtttatgaaggcttttctctcctgtatgtacaaggaaataaa
agagctcatggtcaagacctggggacggccggcagctgtcttcgtcgcttcagtaccatg
cctttcatgttctgcaacatcaataatgtttgcaactttgcttcaagaaatgactattct
tattggctctccaccccagagcccatgccaatgagcatggagcccctgaagggccagagc
atccagccattcattagtcgatgtgcagtatgtgaagctccagctgtggtgattgcggtg
cacagtcagaccatccagattccccgttgtcctcagggatgggattctctctggatcggt
tattccttcatgatgcacacaagtgcaggggcagagggctcaggccaagccctggcctcc
cctggttcctgcttggaagagtttcgttcagctcccttcattgagtgtcatgggcggggc
acctgcaactactatgccaactcctacagcttttggctggcaacagtagatgtgtcagac
atgttcagcaaacctcagtcagaaacgctgaaagcaggagacttgaggacacgtgttagc
cgatgtcaagtgtgcatgaagaggacataa
DBGET
integrated database retrieval system
