Sus scrofa (pig): 100738053
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Entry
100738053 CDS
T01009
Symbol
CHD5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ssc03036
]
100738053 (CHD5)
Chromosome and associated proteins [BR:
ssc03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
100738053 (CHD5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
PHD
DUF1087
Chromo
PHD-1st_NSD
HDA2-3
ResIII
PHDvar_NSD
HTH_Hrp3
DEAD
PHD_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
100738053
NCBI-ProteinID:
XP_020950893
Ensembl:
ENSSSCG00000003366
LinkDB
All DBs
Position
6:complement(67017410..67086685)
Genome browser
AA seq
1985 aa
AA seq
DB search
MRGPLGTEEELPRLFADEMENEDEMSEEEDGGLEAFDDFFPEEPVSLPKKKKPKKLKESR
SKGKRKKKEGSNDELSENEEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDDDE
DDNDDGCLKEPKSSGQLMAEWGLDDVDYLFSEADYHTLTNYKAFSQFLRPLIAKKNPKIP
MSKMMTVLGAKWREFSANNPFKGSSAAAAAAAVAAAVETVTIAPPLTISPQQAPQPVPIR
KAKTKEGKGPGVRKKVKGSKDAKKKGKGRKVAGLKFRFGGVGSKRKKGSSSEEDEREESD
FDSASIHSSSVRSECSAALGKKSKRRRKKKRIDDGDGYETDHQDYCEVCQQGGEIILCDT
CPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKDDDDEEEEGGCEEEEDDHMEFCR
VCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWRWTEP
PAPFMVGLPGPDVEPGVPPPKPLEGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYR
NYQRKNDMDEPPPFDYGSGDEDSKSEKRKNKDPLYAKMEERFYRYGIKPEWMMVHRILNH
SFDKKGDVHYLIKWKDLPYDQCTWEIDDIDIPYYDSLKQAYWGHRELMLGEDARLPKRLV
KKGKKLRDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTD
TILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTY
TGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIE
WACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNN
LEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYY
KFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLV
KSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQ
EAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQN
KKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEEL
FKDDVEGMMSQGQRPATPIPDVQSSKGGALAASAKKKHGSTPPGDNKDVEDSSVIHYDDA
AISKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPDYW
EKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDED
EDFEERPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWG
MPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHV
LTRIGVMSLVRKKVQEFEHVNGKYSTPDLIPEGPEGKKPGEVISSDPNTPVPASPAHLLP
APPGLPDKLEAQLGYMDEKEPGVQKPKKPPEIQALDGVEGEDKHESSDGKERAREERLEE
AEKAQPSPEQLPKEEVLPEKEKILDKLELSLIHSRGDGSDFRPDDTKAEEKEPIETQQNG
DKEEDEEGKKEDRNGKFKFMFNIADGGFTELHTLWQNEERAAVSSGKIYDIWHRRHDYWL
LAGIVTHGYARWQDIQNDPRYMILNEPFKSEIHKGNYLEMKNKFLARRFKLLEQALVIEE
QLRRAAYLNMTQDPNHPAMALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQL
EELLSDMKADVTRLPSMLSRIPPVAARLQMSERSILSRLTNRAGDPTIQQGAFGSAQMYN
NNFGPNFRGPGPGGIVNYNQMPLGPYVTGRCPSASGQHVQGRPRGPGLPPAAPGKPSFPL
SVTDV
NT seq
5958 nt
NT seq
+upstream
nt +downstream
nt
atgcggggcccgctgggcaccgaggaggagctgccgcggctgttcgcggacgagatggag
aacgaggacgagatgtcagaagaagaagatggtggccttgaagcctttgatgactttttc
cccgaggagcctgtgagcctccccaagaagaagaaacccaagaagctcaaggagagcagg
tccaaagggaagaggaagaagaaggaggggagcaatgatgagctgtcggaaaatgaagag
gatctggaagagaagtcagagagcgagggtagtgactactccccgaataaaaagaagaag
aaaaaactcaaggacaagaaagagaaaaaagccaagcgaaaaaagaaggatgacgatgag
gatgacaacgatgatggatgcctcaaggagcccaagtcctcaggacagctcatggccgag
tggggcctggacgacgtggactacctgttctcggaggccgactaccacacgctgaccaac
tacaaggccttcagccagttcctcaggccgctcatcgccaagaagaacccgaagatcccc
atgtccaagatgatgaccgtcctgggtgccaagtggcgggagttcagtgccaacaacccc
ttcaagggcagctcggcggcggctgccgcggcggccgtggccgcagccgtggagacggtt
accatcgcgcctccgctgaccatcagcccccagcaggcaccgcagccagtgcccatccgc
aaggccaagaccaaggagggcaaggggcctggagtgaggaagaaggtcaagggctccaag
gatgcgaagaaaaagggcaaagggagaaaggtggccgggctcaaattccgcttcggaggg
gtcggcagcaagaggaagaagggctcctcgagcgaggaggatgagcgggaggagtcggac
ttcgacagcgccagcatccacagctcctccgtgcgctccgagtgctctgctgccctgggg
aagaagagcaagaggagacgcaagaagaagagaattgatgatggtgatggctacgagaca
gaccaccaggactactgtgaggtgtgccagcagggcggggagatcattctgtgcgacacc
tgcccgagggcctaccacctcgtctgcttggacccagagctggagaaagctccggagggc
aagtggagctgtccccactgtgagaaggaagggatccagtgggagccgaaggacgacgac
gacgaggaggaggagggcggctgcgaggaggaggaggacgaccacatggagttctgccgc
gtgtgcaaggacggcggcgagctgctctgctgcgacgcctgcccctcctcctaccacctg
cactgcctcaacccgccgctgcccgagatcccaaacggtgaatggctctgcccgcgctgt
acttgtccccccctgaagggcaaagtccagcggatcctgcattggaggtggacagagccc
ccggcccccttcatggtggggctgccggggcccgacgtggagccaggcgtccccccaccc
aagcctctggagggcatcccagagagagagttctttgtcaagtgggctgggctctcctac
tggcactgctcctgggtgaaggagctacagctggagctctaccacacggtcatgtatcga
aactaccaaagaaagaacgacatggacgagccaccgccctttgactacggctccggggac
gaggacagcaagagcgagaagaggaagaacaaggacccgctctacgccaagatggaggag
cgcttctaccgctacggcatcaagcccgagtggatgatggtccatcggatcctgaaccac
agcttcgacaaaaagggggacgtgcactacctgatcaagtggaaagacctgccctatgac
cagtgcacctgggagatcgacgacattgacatcccctactacgacagcctgaagcaggcc
tactggggccacagggagctgatgctgggagaggacgccaggctgcccaagaggctggtc
aagaagggcaagaagctgagggacgataaacaggagaagcccccggacacgcccattgtg
gatcccacggtcaagttcgacaagcagccgtggtacatcgactccacgggcggcacgctg
cacccttaccagctggagggccttaactggttgcgcttctcctgggcccagggcaccgac
accatcctggctgacgagatgggtctgggcaagaccgtgcagaccattgttttcctgtac
tccctgtacaaggaggggcactccaaggggccctacctggtcagtgcgcccctgtccacc
atcatcaactgggaacgtgagttcgagatgtgggcgcctgacttctacgtggtcacctac
acgggggacaaggagagccgctccgtgatccgggagaacgagttttccttcgaggacaat
gccattcggagcgggaagaaggtgttccgcatgaagaaagaagtgcagatcaagttccac
gtcctgctcacctcctacgagctcatcaccattgaccaggccatcctgggctccatcgag
tgggcctgcctcgtggtggatgaggcccaccggctcaagaacaaccagtccaagttcttt
agggtcctgaacagctacaagatcgattacaagctgctgctgacggggaccccccttcag
aacaacctggaggagctgttccatcttctcaacttcctgacgccggagaggttcaacaac
ctggagggcttcctggaggagtttgccgacatctccaaggaagaccagatcaagaagctg
catgacctgctgggcccgcacatgctgaggcggctcaaggctgacgtgttcaagaacatg
ccggccaagacggagctgatcgtccgcgtggagctgagccagatgcagaagaagtactac
aagttcatcctcacgcgaaacttcgaggcgctgaactccaaggggggcgggaaccaggtg
tcgctgctcaacatcatgatggacctgaagaagtgttgcaaccacccctacctcttcccc
gtggccgctgtggaggcccccgtcctgcccaacggctcctatgatggcagctcgctggtc
aagtcttcagggaagctgatgctgctgcagaagatgctcaagaagctgcgggacgaaggg
caccgtgtgctcatcttctcccagatgaccaagatgctggacctcttggaggacttcctg
gagtacgagggctacaagtatgagcggattgacggcggcatcactgggggcctccggcaa
gaggcgattgacagattcaacgcccctggggcccagcagttctgcttcctcctctccacc
cgggcaggcggcctgggcatcaacctggccacggcagacacggtcatcatctatgactcc
gactggaacccccacaatgacatccaggccttcagccgcgcccatcgcatcgggcagaac
aagaaggtgatgatctaccgcttcgtgacgcgggcctcggtggaggagcgcatcacgcag
gtggccaaacgcaagatgatgctcacgcacctggtggtgcggcccggcctgggctccaag
tcgggctccatgaccaagcaggagctggacgacatcctcaagttcggcacggaggagctc
ttcaaggacgacgtggagggcatgatgtctcagggccaaaggcctgccacgcccatcccc
gacgtccagtcctccaaagggggtgccctggccgccagtgcaaagaaaaagcatggcagc
actccaccaggtgacaacaaggacgtggaggacagcagtgtgatccactatgacgacgcg
gccatctccaagctgctggaccggaaccaggacgctacggacgacacggagctgcagaac
atgaatgaatacctgagttccttcaaggtggcgcaatacgtggtgcgcgaggaggacggc
gtggaggaggtggagcgggagatcatcaaacaggaggagaatgtggaccccgactactgg
gagaagctgttgcggcaccactacgagcagcagcaggaggacctggcccgcaacctgggc
aagggcaagcgtatccgcaagcaggtcaactacaacgacgcctcccaggaggaccaggag
tggcaggatgagctctcagacaaccagtcagaatattccatcggctccgaggacgaggac
gaggactttgaggagaggccggaagggcagagcggacggcgacaatccaggaggcagctg
aagagcgacagggacaagcctctgccccctcttctcgcccgggtcggcggcaacatcgag
gtgctgggcttcaacgccaggcagcggaaggcctttctcaatgccatcatgcgctggggc
atgcccccccaggacgccttcaactcccactggctggtgcgggaccttcgtgggaagagc
gagaaggagtttagagcctatgtgtccctcttcatgcggcacctgtgtgagccgggggct
gacggcgcggagacctttgcggacggcgtgccccgcgagggcctctccaggcagcacgtg
ctcacccgcatcggggttatgtcactagttaggaagaaggttcaggagtttgaacacgtc
aacgggaagtatagcactccggacttgatccccgagggccccgagggcaagaagccaggg
gaggtcatctcctcggaccccaacactccagtgcctgccagccctgcccaccttctgcct
gccccgccgggcctgccagacaaactggaagcccagctgggctacatggatgagaaggag
ccgggggtgcagaagccgaagaagcccccggaaatccaggccctggatggcgtggagggc
gaggacaaacacgagagctctgacggcaaggagagggcccgcgaggagcgcctggaggag
gccgagaaggcccagccctctccggaacagctgccgaaagaagaagtgcttcctgagaag
gagaagatcctggacaagctggagctaagcctaattcacagcagaggcgatggcagtgat
ttcaggccagatgacaccaaggctgaggagaaggagcccattgaaacacagcagaatggt
gacaaagaggaagatgaggaggggaagaaggaggacaggaatgggaagttcaaattcatg
ttcaacattgcggacgggggcttcacagagctacacacgctgtggcagaacgaggaacgt
gccgctgtgtcctcggggaaaatctatgacatctggcaccggcgccatgactactggctg
ctggcgggcatcgtgacgcacggctatgcccgctggcaggacatccagaacgacccgagg
tacatgatcctcaacgagcccttcaagtctgagatccacaagggcaactacctggagatg
aagaacaagttcctggcccgcaggttcaagctgctagagcaggcactggtcatcgaggag
cagctccggagggccgcgtacctcaacatgacccaggaccccaaccacccggccatggcc
ctcaacgcccgcctggccgaggtggagtgccttgccgagagccaccagcacctgtccaag
gagtccctggccgggaacaagcctgccaacgccgtcctgcacaaggtcctgaaccagctg
gaggagctgctgagcgacatgaaggcggatgtgactcgcctgccctccatgctgtcccgc
atccccccagtggccgcccgcctccagatgtccgagcgaagcatcctgagccgcctgacc
aaccgagccggtgaccccaccatccagcagggcgctttcggctcagcccagatgtacaac
aacaactttgggcccaacttccggggccctggaccgggagggattgtcaactacaaccag
atgcccctggggccctatgtgaccggtaggtgcccgtcagcttccgggcagcatgtgcag
gggcgcccgcggggccccggcctgccccccgccgccccgggcaagccaagcttccctctc
tctgtgacagatgtctag
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integrated database retrieval system
