Sus scrofa (pig): 100738123
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Entry
100738123 CDS
T01009
Symbol
COL1A1
Name
(RefSeq) collagen alpha-1(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04151
PI3K-Akt signaling pathway
ssc04510
Focal adhesion
ssc04512
ECM-receptor interaction
ssc04518
Integrin signaling
ssc04611
Platelet activation
ssc04820
Cytoskeleton in muscle cells
ssc04926
Relaxin signaling pathway
ssc04933
AGE-RAGE signaling pathway in diabetic complications
ssc04974
Protein digestion and absorption
ssc05146
Amoebiasis
ssc05165
Human papillomavirus infection
ssc05205
Proteoglycans in cancer
ssc05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100738123 (COL1A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100738123 (COL1A1)
04518 Integrin signaling
100738123 (COL1A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100738123 (COL1A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100738123 (COL1A1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
100738123 (COL1A1)
09152 Endocrine system
04926 Relaxin signaling pathway
100738123 (COL1A1)
09154 Digestive system
04974 Protein digestion and absorption
100738123 (COL1A1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
100738123 (COL1A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
100738123 (COL1A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
100738123 (COL1A1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
100738123 (COL1A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
100738123 (COL1A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssc00536
]
100738123 (COL1A1)
Glycosaminoglycan binding proteins [BR:
ssc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100738123 (COL1A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
100738123
NCBI-ProteinID:
XP_020922812
UniProt:
A0A8D1Z2N0
A0A287A1S6
LinkDB
All DBs
Position
12:complement(26379087..26397180)
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AA seq
1466 aa
AA seq
DB search
MFSFVDLRLLLLLAATALLTHGQEEGQEEGQQGQEEDIPPVTCVQNGLRYHDRDVWKPVP
CQICVCDNGNVLCDDVICDEIKNCPSARVPAGECCPVCPEGEVSPTDQETTGVEGPKGDT
GPRGPRGPSGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSAGISVP
GPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKP
GRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAP
GQMGPRGLPGERGRPGPPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQ
GARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGGKGANGAPGIAGAPGFPGARGPS
GPQGPSGPPGPKGNSGEPGAPGSKGDTGAKGEPGPTGVQGPPGPAGEEGKRGARGEPGPA
GLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAK
GLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGER
GVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKP
GEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAP
GSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAP
GDKGETGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDA
GPPGPAGPTGPPGPIGSVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPP
GPAGKEGSKGPRGETGPAGRPGEAGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQR
GVVGLPGQRGERGFPGLPGPSGEPGKQGPSGPSGERGPPGPMGPPGLAGPPGESGREGAP
GAEGSPGRDGAPGPKGDRGESGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPV
GPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPA
GPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSGGFDF
SFLPQPPQEKAHDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPART
CRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSVPQKNWYISKNP
KDKRHVWYGESMTDGFQFEYGGEGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMD
QQTGNLKKALLLQGSNEIEIRAEGNSRFTYSVIYDGCTSHTGAWGKTVIEYKTTKTSRLP
IIDVAPLDVGAPDQEFGIDLSPVCFL
NT seq
4401 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggacctccggctcctgctcctcttagcggccaccgccctcctgacg
cacggccaagaggagggccaagaagaaggccaacaaggccaagaagaagacatcccacca
gtcacctgcgtacagaacggcctcaggtaccatgaccgagacgtgtggaaacccgtgccc
tgccagatctgtgtctgcgacaacggcaatgtgttgtgcgatgacgtgatctgcgacgaa
atcaagaactgtcccagcgccagagtccctgcgggcgagtgctgccccgtctgccccgaa
ggcgaggtgtcacccaccgaccaggaaaccacgggagtcgagggacccaagggagacact
ggcccccgaggccccaggggaccctctggcccccctggccgagacggcatccctggacaa
cctggacttcctggaccccccggacctcctggaccccccggaccccctggcctcggagga
aactttgctccccagttgtcttatggctatgatgagaagtcagcaggaatttccgtgccc
ggccccatgggtccttctggtcctcgtggtctccctggcccccctggcgcacctggtccc
caaggtttccaaggcccccctggtgagcctggcgagcctggcgcctccggtcccatgggt
ccccgtggtcctcctggcccccctggcaagaacggagatgatggtgaagctggaaagcct
ggtcgccctggtgagcgtgggcctcctggacctcagggtgctcggggattgcccggaaca
gctggcctccctggaatgaagggacacagaggtttcagtggtttggatggtgccaaggga
gatgctggtcctgctggtcccaagggtgagcctggtagccctggtgaaaatggagctcct
ggtcagatgggcccccgtggtctgcctggtgagcgaggtcgccctggaccccctggccct
gctggtgctcgtggaaatgatggtgctactggtgctgctggaccccctggtcccactggc
cccgctggtcctcctggcttccctggtgctgttggtgctaagggtgaagctggtccccaa
ggagcccgaggctctgaaggtccccagggtgtgcgtggtgagcctggcccccctggccct
gctggtgctgctggccctgctggaaaccctggtgctgatggacagcctggtggcaaaggt
gccaacggcgctcctggtattgctggtgctcctggcttccctggtgcccgaggcccctct
ggaccccagggtcccagcggcccccctggtcccaagggtaacagcggtgaacctggtgct
cccggcagcaaaggagacactggcgccaagggagagcccggtcccactggtgttcaaggc
ccccctggccctgctggagaagaaggaaagcgaggagcccgaggtgaacctggacctgct
ggcctgcctggaccccctggcgagcgtggtggacctggtagccgtggtttccctggcgcc
gatggtgttgctggtcccaagggtcccgctggtgaacgtggttctcctggccctgctggt
cccaaaggttctcctggtgaagctggtcgccccggtgaagctggtctgcctggtgccaag
ggtctgactggaagccctggcagccctggtcctgatggcaaaactggcccccctggtccc
gccggtcaagatggtcgccctggacccccaggccctcctggtgcccgtggtcaggctggt
gtgatgggtttccctggacctaaaggtgctgctggagagcctggcaaagctggagagcga
ggtgttcccggaccccctggcgcagttggtcctgctggcaaagatggagaagctggagct
cagggaccccccggacctgctggccccgctggtgagagaggagaacaaggccccgctggc
tcccctggattccagggtctccctggccctgctggtcctcctggtgaagcaggcaaaccc
ggtgaacagggtgttcctggagatctcggtgcccccggcccctctggagcaagaggcgag
agaggtttccccggcgagcgtggtgtgcaaggtccccccggtcctgcaggtccccgtgga
gccaacggtgcccctggcaatgatggtgctaagggtgatgctggtgcccctggagcccct
ggtagccagggcgcccctggccttcagggaatgcctggcgaacgaggtgcagctggtctc
ccaggtcctaagggtgacagaggagatgctggtcccaaaggtgctgatggtgctcctggc
aaagatggcgtccgtggtctgactggccccattggtcctcccggccccgctggtgcccct
ggtgacaagggtgaaactggtcctagcggtcctgctggtcccactggagctcgtggtgcc
cccggtgaccgtggtgagcctggtccccccggccctgctggcttcgctggcccccctggt
gctgatggccaacctggtgctaaaggcgaacctggtgatgctggtgctaaaggcgatgct
ggtccccccggccctgctggacccactggcccccctggccccattggtagcgttggtgct
cccggacccaaaggtgctcgtggcagcgctggtcctcctggtgctactggtttccctggt
gctgctggccgagtcggtccccccggcccctctggaaatgctggaccccctggccctcct
ggtcctgctggcaaagaaggcagcaaaggtccccgtggtgagactggccccgctgggcgt
cccggtgaagccggtccccctggcccccctggccccgctggtgagaaaggatcccctggt
gctgacggacctgctggtgctcccggtactcctggacctcagggtattgctggacagcgt
ggtgtggtcggcctgcccggtcaacgaggagaaagaggcttccctggtcttcccggccca
tctggtgaacccggcaaacaaggtccttctggaccaagcggcgaacgtggcccccctggt
cccatgggcccccctggattggctggaccccctggcgagtctggacgtgagggagcccct
ggcgctgaaggatcccctggacgagatggtgctcctggccccaagggtgaccgtggtgag
agcggccctgctggaccccctggtgctcctggtgctcctggtgcccccggccccgttggc
cctgctggcaagagcggcgatcgtggtgagactggtcctgctggtcctgctggtcccgtt
ggccccgttggtgcccgtggccctgctggaccccaaggcccccgtggtgacaagggtgag
acaggcgaacagggcgacagaggcattaagggtcaccgtggcttctctggtctccagggt
ccccctggccctcccggctctcctggtgagcaaggtccctccggagcttctggtcccgct
ggtccccgaggtccccctggctctgctggtgctcctggcaaagatggactcaacggtctc
cccggccccatcggtccccctgggcctcgtggtcgcactggtgatgctggccctgttggt
cctcccggccctcctggaccccccggtccccctggtcctcccagcggcggtttcgacttc
agcttcttgccccagccacctcaagagaaggctcacgatggtggccgctactaccgggcc
gatgatgccaatgtggtccgcgaccgtgacctcgaggtggacaccaccctcaagagcctg
agccagcagatcgagaacatccggagccccgaaggcagccgcaagaaccccgcccgcacc
tgccgcgacctcaagatgtgccactccgactggaagagcggagaatactggattgacccc
aaccaaggctgcaacctggacgccatcaaagtcttctgcaacatggagacaggcgagacc
tgcgtgtaccccactcagcccagcgtgccccagaagaactggtacatcagcaagaacccc
aaggacaagaggcacgtctggtacggcgagagcatgaccgacggattccagttcgagtac
ggcggcgagggctccgatcctgctgacgtggccatccagctgaccttcctgcgcctgatg
tccactgaggcttcccagaacatcacctaccactgcaagaacagcgtggcctacatggac
cagcagactggcaacctcaagaaggccctgctcctccagggctccaacgagatcgagatc
cgggccgagggcaacagccgcttcacctacagcgtgatctacgacggctgcacgagtcac
accggagcctggggcaagacagtgatcgaatacaaaaccaccaagacctcccgcctgccc
atcatcgatgtggcccccttggacgttggcgcccccgaccaagaattcggcatcgacctt
agccctgtctgcttcctgtaa
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