Sus scrofa (pig): 100738783
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Entry
100738783 CDS
T01009
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03013
Nucleocytoplasmic transport
ssc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100738783 (UPF1)
03015 mRNA surveillance pathway
100738783 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100738783 (UPF1)
Enzymes [BR:
ssc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100738783 (UPF1)
5.6.2.5 RNA 5'-3' helicase
100738783 (UPF1)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100738783 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
100738783 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
NPHP3_N
ATPase
nSTAND3
SLFN-g3_helicase
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
AAA_22
Motif
Other DBs
NCBI-GeneID:
100738783
NCBI-ProteinID:
XP_020939127
UniProt:
A0A8D1VEP4
LinkDB
All DBs
Position
2:complement(58975013..59013546)
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AA seq
1139 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGGGAGAPV
GAGPGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHA
CSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLE
CYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWL
VKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQY
QNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWL
RDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQV
DFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDL
NHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLT
EKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSAD
EKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVV
LGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAF
PSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAA
NVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQG
REKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGGLSHAGPCWRYGVIIVGNPKAL
SKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDARE
AIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFG
QANGPATGRGTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYI
SMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctctcagacgctcaccttcctggataccgaggag
gccgagctcctcggcgccgacacgcagggctccgagttcgagtttaccgacttcaccctc
cccagccagacgcagacgccccccggtggtcctggaggtggaggcgctggggccccggtc
ggcgcggggccgggcgcggccgccggacagctcgacgctcaggtcggtggacctgagggc
atcctccagaatggggctgtggatgacagcgtggccaagaccagccagttgttggctgag
ttgaactttgaagaggatgaagaggatacttattacacgaaggatctccccgtgcatgcc
tgcagttactgcggaatacacgatcctgcttgcgtggtttactgtaatactagcaagaag
tggttctgtaatggacgtggaaatacttctggcagccacatcgtaaatcacctcgtgagg
gcaaaatgcaaagaggtgactctgcacaaggatgggcccctgggggagacggttttggag
tgttataactgtggctgccgcaatgtcttcctcctcggcttcatccctgccaaggctgac
tcagttgtggtgctgctgtgcaggcaaccctgtgccagtcagagcagcctcaaggacatc
aactgggacagctcacagtggcagcccctgatccaggaccgttgcttcctgtcctggctg
gtcaagatcccttcagagcaggagcagctgcgggcccggcagatcactgcccagcagatc
aacaagttggaggagctctggaaggaaaatccctctgccaccttggaggacctggagaag
ccgggagtagatgaggagccacagcatgtcctcctgcggtacgaggatgcctaccagtac
cagaacatattcggtcctctggtcaagctggaggccgactacgataagaaactgaaggag
tcccagactcaagataacatcacggtcaggtgggacctgggccttaacaagaagagaatc
gcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatttggtta
agagacatgcgactcatgcagggggatgagatatgcctgcggtacaaaggggacttggca
cccctatggaaagggatcggtcacgtcatcaaggtccctgataattatggcgatgagatc
gctattgagcttcggagcagtgtgggtgctcccgtggaggtgactcataatttccaggtg
gattttgtgtggaagtcaacatcattcgacaggatgcagagtgcattgaaaacctttgct
gtggatgagacctctgtgtcaggctacatctaccacaaactgctcggccatgaggtggag
gatgtgatcatcaagtgccagctgccgaagcgcttcacggcacaggggctcccagacctc
aaccactctcaggtttatgccgtgaagactgtgctgcaaagaccactgagcctgatccaa
ggcccaccaggcacagggaagacggtgacttcagccaccatcgtctaccacctggctcgg
caaggcaatgggcccgtgctcgtctgtgctccaagcaacatagctgtggatcagctgacc
gagaagatccaccagactgggctcaaagttgtgcggctctgtgctaagagccgcgaggcc
attgactccccggtgtcattcctggccctgcacaaccagatcaggaacatggacagcatg
ccagagctccagaagctgcagcagctgaaggatgagactggggagctgtcatccgcagat
gagaagcggtaccgggccctgaagcgcaccgccgagagggagctgctcatgaatgcagat
gtcatctgctgcacatgtgtgggcgcaggggacccgaggcttgccaagatgcagttccgc
tccattttaatcgacgaaagcacccaggccaccgagccagagtgcatggtccctgtggtc
ctcggagccaagcagctgatccttgtgggtgaccactgccagctgggccctgtggtgatg
tgcaagaaggcggccaaggctgggctgtcccagtcactcttcgagcgcctggtggtcctg
ggcatccgtcccatccgtctccaggtccagtatcggatgcaccctgcactcagtgccttc
ccgtccaacatcttctatgagggctctcttcagaacggcgttactgcagcggatcgtgtg
aagaaggggtttgacttccagtggccccaaccagataagccaatgttcttttatgtgacc
cagggccaagaggagattgccagctctggcacctcctacctgaacaggacggaagccgca
aatgtggaaaagatcaccacgaagctgctgaaagcgggtgccaagccagaccagatcggc
atcatcacgccctatgagggccagcgctcctacctggtgcagtacatgcagttcagcggc
tccctgcacaccaagctttaccaggaggtggagattgccagtgtggatgcattccaggga
cgtgagaaggacttcatcatcctctcctgtgtgcgggcaaatgagcaccaaggcattgga
tttttaaatgatcccaggcggcttaatgtggccttgaccagagcacggtatggaggacta
agtcatgctgggccttgctggagatatggggtcattattgtgggcaacccaaaggccctg
tccaagcagccactgtggaaccacctgctgaactactacaaggagcagaaggtgctggtg
gaggggcctctgaacaatcttcgggagagcctcatgcagttcagcaagcccaggaagctg
gtcaacaccatcaacccgggagcccgcttcatgacaacagccatgtatgatgcccgggag
gccattatcccaggatcggtttatgaccggagcagccagggccggccctcaaacatgtac
ttccagacccatgaccagattggcatgatcagtgccggccccagccatgtggccgccatg
aacattcccatccccttcaacctggttatgccgcccatgccgccaccggggtactttgga
caagctaacgggccagccacaggccggggcaccccaaaaggcaagactggtcgtggagga
cgccagaagaaccgctttgggcttccaggccccagccagacaaatctccccaacagccag
gccagccaggatgtggcatcacagcccttctcacagggcgccctgacccagggctacatc
tccatgagccagccctcccagatgagccagcccggcctctcccagcctgagctgtcccag
gacagttaccttggagatgagtttaagtcccagatcgatgtggcgctgtcacaagattcc
acataccagggagagcgggcgtaccaacacggcggagtgacggggctgtcccagtactag
DBGET
integrated database retrieval system
