Sus scrofa (pig): 100739111
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Entry
100739111 CDS
T01009
Symbol
RORB
Name
(RefSeq) nuclear receptor ROR-beta isoform X1
KO
K08533
RAR-related orphan receptor beta
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04710
Circadian rhythm
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09150 Organismal Systems
09159 Environmental adaptation
04710 Circadian rhythm
100739111 (RORB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssc03000
]
100739111 (RORB)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ssc03310
]
100739111 (RORB)
Transcription factors [BR:
ssc03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
100739111 (RORB)
Nuclear receptors [BR:
ssc03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
100739111 (RORB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
100739111
NCBI-ProteinID:
XP_020920591
UniProt:
A0A8D0X599
F1SJB4
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All DBs
Position
1:227573972..227776806
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AA seq
491 aa
AA seq
DB search
MTTRSGRAATPCEGDWSLNLSFSPEVTVSMKHSKAQIEVIPCKICGDKSSGIHYGVITCE
GCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKK
QRDSLYAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLNNEASGTYANGHVID
LPKSEGYYSVDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGIT
MTEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQSKSREALWQQCAIQITH
AIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQ
MFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPRKVQKLQEKI
YFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPDIVNTLFPPLYKE
LFNPDCATVCK
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgactacgaggagcggaagagcggccacaccatgcgagggagactggagtttaaatctt
tcattcagtcctgaagtaacagtcagcatgaagcacagcaaagcacaaattgaagtgata
ccatgcaaaatttgtggcgataaatcctctgggatccactacggagtcatcacatgtgaa
ggctgcaagggattctttaggaggagccagcagaacaatgcctcttactcctgcccaagg
cagagaaactgtttaattgacagaaccaacagaaaccgttgccaacactgccgactgcag
aagtgtcttgctctaggaatgtcaagagatgctgtgaagtttgggaggatgtccaagaag
caaagggacagcctctatgccgaggtgcagaagcaccagcagaggctgcaggagcaacgg
cagcagcagagcggggaggcagaagccctcgccagagtgtatagcagcagcatcagtaat
ggcctcagcaacctgaacaacgaggccagtggcacttatgccaatggacacgtcatcgac
ctgcccaagtctgagggttattacagcgtggattccggtcagccgtcccctgatcagtca
ggacttgacatgactggaatcaaacagataaagcaagaacctatctatgacctcacctcc
gtacccaacttgtttacctatagctctttcaacaacgggcagttagcaccagggataaca
atgactgaaatcgatcgaattgcacagaacatcattaagtcccatttggagacttgtcaa
tacacgatggaggagcttcaccagctggcttggcagacccacacctatgaagaaattaaa
gcgtatcaaagcaagtcccgggaagcactgtggcagcagtgtgccatccagatcactcac
gccatccaatatgtggtagagtttgcaaagcgaataacaggcttcatggagctctgtcaa
aatgatcaaatcctccttctgaagtcaggttgcttggaagtggttttagtgagaatgtgc
cgtgccttcaacccattaaacaacactgttctgtttgaaggaaaatatggaggaatgcaa
atgttcaaggccttaggttctgatgacctagtgaatgaagcatttgactttgcaaagaat
ctgtgttccttgcagctgactgaggaagagattgctttgttctcctctgctgttctgata
tctccagatcgagcctggctgatagaaccaaggaaggtccagaagcttcaggaaaaaatt
tattttgcacttcaacatgtgattcagaagaatcacctggatgatgagaccttggcaaag
ttaatagccaagattccaaccatcacggcagtttgcaacttgcacggggagaagctgcag
gtatttaagcaatcgcatccagacatagtgaatacactctttcctccattatacaaggag
ctctttaatcctgactgtgccaccgtctgcaaatga
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