KEGG   Sus scrofa (pig): 100739621
Entry
100739621         CDS       T01009                                 
Symbol
AFF1
Name
(RefSeq) AF4/FMR2 family member 1 isoform X1
  KO
K15184  AF4/FMR2 family member 1
Organism
ssc  Sus scrofa (pig)
Pathway
ssc05202  Transcriptional misregulation in cancer
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09160 Human Diseases
  09161 Cancer: overview
   05202 Transcriptional misregulation in cancer
    100739621 (AFF1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ssc03021]
    100739621 (AFF1)
Transcription machinery [BR:ssc03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     100739621 (AFF1)
SSDB
Motif
Pfam: AF-4 AFF4_CHD AF4_int BRD4_CDT
Other DBs
NCBI-GeneID: 100739621
NCBI-ProteinID: XP_020957439
LinkDB
Position
8:complement(131728819..131924814)
AA seq 1228 aa
MAFTERVNSSGNSSLYNEDRNLLRIREKERRNQEAHQEKEAFSEKIPLFGEPYKTEKGDE
LSSRIQNMLGNYEEMKEFLSTKSHSQRLDASEHRLGKPRYPLLPEKGSGIPSHSFHPSLH
HQPGNTPASGPLPVGTISQNPKMAQPRMEPVPSLQGKSYGPPDGPLLPQDRLAPEGYGSS
QHKKRERRADGDHGALMPDPAPERELAPLFALPSPVPPLSPVHSNQQTLPRMQGSSKGHS
SSSSSSSKGYGPGKSPKDLAGKVPEKETPQEPSGATAGLGGAPPPPPSQTFPPPPLPSKS
LAMQQKPTAYVRPMDGQDQAPSESPELKPLPEDFRQQTFEKTDLKVPAKTKLTKLKMPAQ
SVEQTYSNEVHCVEEILKEMTHSWPPPLTAIHTPGTAEPSKFPFPTKDSQHISSATQNQK
QYDTSSKPHSNPQQGTSMLRDDLQLSDSEDSDGDQTPEKPPSASAPPSAPPPPPPPPPPP
PPPPEAASAHSSSAESESTSDSDSSSDSESESSSSDSEENEPQEAPAPPEPEPPTTNKWQ
LDNWLTKVSQPPVPAEAPGSAEPPPRHADNKGKGGDSAPAGHERSESKEPAPKSSSRGPR
GPSEGPHSGKRTCQKSPAQQEPPQRQTVGTKQPKKPAKPSAPADARACVQAESQLGSKDQ
PSKDKPKVKTKGRPRAGESCEPKPPAPAPAPGPGERKKHRSGPADPPKAPPKEAAEDGSP
DHFALVPLTQSQGPARGGARTSGCRLAVVVQEDRRKDRPPGPSRDTKLLSPLRDTPPPQS
LMVKITLDLLSRVPQPPGKASRPKKPEDKPPVAAKKPDPEKRSSDPASKLAKKRKGESER
DHESKKTRLEKEIKSQSSASSSHKEPSKSKTPRPSSEPSKKEPLPPPLVSSSSSQKPAKP
AQKRPRQEADACGQDPPKSASSSKGIHKDSSVSKHRKVDGKGSGSSTEHRGSSGDTANRF
PVPCLPNGNSKPGKPHVKSDKQQADFHMKEAKRLKDKAELVTDKVGKAFKYLEAALAFIE
CGIAVESESPASRSAYSIYSETLDLIKSIMSLKSFSDATTPTQEKIFAVLCMRCQSILNM
AMFRCKKDIAIKYSRTLNEHFFKTSSRVAQAPSPCIARSTGTPSPLSPTPSPAGSLGSQS
GAGGGMPAAVSTPVTIQNMTSSYVSITSHVLTAFDLWEQAEVLIKKNKEFFAQLSTSVCA
LALNSSLMDLVHYTRQGFQRLKQVTKTP
NT seq 3687 nt   +upstreamnt  +downstreamnt
atggcatttaccgaaagagtcaacagcagtggcaacagcagcttgtacaatgaagacaga
aacctgcttcggattagagagaaggagagacgcaaccaggaagctcaccaagagaaggag
gcattctctgaaaagatccccctttttggagagccctacaagacagaaaaaggtgatgag
ctctccagccggatacagaacatgctgggcaactacgaagaaatgaaggagtttcttagt
accaagtcccactctcaacgcttggatgcttccgaacacaggttgggaaagcccagatat
cctttacttcccgagaaggggagcggcatcccatcccactccttccaccccagcctccac
caccagccagggaacacgcctgcctctggaccacttcctgttggtaccatcagccagaac
ccaaagatggcgcagcccaggatggagccagtgccgagtctccagggcaaaagctacggg
cccccggacgggccgctcctgccccaagatcgcctcgctcccgagggctacggctccagt
cagcacaaaaagcgcgagcgcagagctgacggcgaccacggtgctttgatgccagacccg
gccccggagcgggagctcgcgcctctcttcgctctgccgtccccggtcccccctctgtct
cctgtacattccaaccagcagactctccccaggatgcagggaagcagcaagggtcacagc
agcagcagcagcagcagcagcaagggctacggcccgggcaagtctcccaaggacctggcg
ggaaaggtccccgagaaagagacccctcaagagccttcgggggccacggctggcctgggg
ggagccccgcccccgcccccttctcagacgttccccccgccccccctcccgtcaaaaagc
cttgcaatgcagcagaagcccacggcctacgtccggcccatggatggccaagatcaggcc
cccagcgagtcccctgaactgaagccgctgccggaagacttccggcaacagacctttgaa
aaaacagacttaaaagtgcctgccaaaaccaagctcactaagctcaaaatgcctgctcag
tcggtcgagcagacctactccaatgaagtccattgtgttgaagagattctgaaggaaatg
acccattcatggccgcctcctctgacagccatacacacgcccggtactgctgagccgtcc
aaatttccttttcccacaaaggattctcagcatattagttctgcaacccaaaaccaaaaa
caatatgacacatcttcaaaaccccacagtaatcctcagcagggaacatccatgctcaga
gatgaccttcagctcagtgacagtgaggacagtgatggcgatcaaaccccagagaagcct
ccttccgcatctgcacctccaagcgccccgccacccccgccgccgccgcctccgcctccg
ccgccgccccccgaggcggcctccgcacattccagcagcgcagagtcggagagcaccagc
gactcggacagctcctcggactcggagagcgagagcagctccagtgacagcgaggagaac
gagccccaggaagccccggctccccccgagcccgagcctccgacaacaaacaaatggcag
ctggacaactggctgaccaaagtcagccagcccccggtgcccgccgaggccccgggcagc
gccgagcccccgcctcggcacgcggacaataagggcaagggcggcgacagcgcccccgcg
ggtcacgagcgctcggagtccaaagagcctgcccccaaaagctccagccgaggcccccgg
ggcccttccgaaggcccccactcgggcaagaggacctgtcagaagtcccccgcccagcag
gaacccccgcagaggcaaaccgtgggaaccaaacagcccaaaaaacccgccaagccctcc
gcccctgcggacgcgcgcgcctgcgtacaagcggagagccagctgggctccaaagaccag
ccctccaaagacaagcccaaggtcaagacgaaagggcggccgcgcgccggcgagagctgc
gagcccaagccgccagcgcctgcgcctgcccctggcccgggtgagcggaagaagcaccgg
agcggccccgccgaccccccgaaggcgcccccgaaggaggcagcagaggacgggagcccc
gatcactttgcgctcgtccccctgacgcagagccagggccccgcccgcggtggcgccagg
actagtggctgccgactggccgtggtcgtgcaggaggaccgccgcaaggacagacccccg
gggccttcgcgggacaccaagctgctctccccgctcagggacactccgcccccgcaaagc
ttgatggtgaagatcaccctggatctcctctcccgggtcccccagccccccgggaaggcc
agccgccccaagaagccggaggacaaaccgcccgtggccgcgaagaagcccgatcctgag
aagcgaagctcagaccccgccagcaagttggccaaaaagagaaagggcgaatcagaaaga
gatcacgagagcaagaaaaccagactggagaaggaaatcaaatcacagtcatcagcttca
tcctcccacaaagaaccttctaagtcaaaaacgcctcggccctcctcggagccctccaag
aaggagccgcttccccctccgcttgtctcatcctcgtcctcccagaagccagccaaacct
gcacaaaagaggccgaggcaggaagcagacgcctgtggccaggaccctcccaaaagtgcc
agtagtagcaagggcatccacaaagactcttccgtttccaagcacagaaaagtggacggg
aagggctctggaagctctacagaacacagaggatcttctggagatactgcaaaccgtttc
ccagtgccttgtttgccaaatggtaactccaaaccagggaagcctcacgtgaagtctgac
aaacaacaagcagattttcacatgaaggaggccaaaaggttgaaggacaaagcagaacta
gtgacggacaaggtcgggaaggcgttcaagtacctggaagccgccttggccttcatcgag
tgtggcatcgccgtggagtcggagagcccggcgtcccggtccgcttactccatctactcg
gagaccctcgacctcatcaaatccataatgtcattaaaatccttctcagatgccacaaca
ccaacacaggagaaaatatttgctgttttatgcatgcgctgccagtccattttgaacatg
gcgatgtttcgttgtaaaaaagatatagcaataaagtattcccgaactctcaacgaacac
ttcttcaagacttcttcccgagttgcccaggcaccttcgccatgcattgcaagaagcaca
ggcacgccgtccccgctctcgccgacgccttcgccagccggctctctcggatcgcagtcc
ggcgccggcggcgggatgcccgccgctgtcagcaccccggtcaccatccagaacatgaca
tcttcctatgtcagcatcacttcccacgtccttaccgcctttgacctttgggaacaggct
gaggtcctcatcaagaagaacaaagaattttttgctcagctcagcacaagcgtgtgtgcc
ctggccctcaacagcagtttgatggatctggtgcattatacaagacagggttttcagcgg
ctaaaacaagtcaccaaaaccccttag

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