Sus scrofa (pig): 102158045
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Entry
102158045 CDS
T01009
Symbol
DDX5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03040
Spliceosome
ssc05202
Transcriptional misregulation in cancer
ssc05205
Proteoglycans in cancer
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102158045 (DDX5)
09160 Human Diseases
09161 Cancer: overview
05202 Transcriptional misregulation in cancer
102158045 (DDX5)
05205 Proteoglycans in cancer
102158045 (DDX5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssc03041
]
102158045 (DDX5)
03009 Ribosome biogenesis [BR:
ssc03009
]
102158045 (DDX5)
Enzymes [BR:
ssc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102158045 (DDX5)
Spliceosome [BR:
ssc03041
]
Complex A
U1 snRNP components
U1 related factors
102158045 (DDX5)
Complex B
102158045 (DDX5)
Ribosome biogenesis [BR:
ssc03009
]
Eukaryotic type
Pre-60S particles
Helicases
102158045 (DDX5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
P68HR
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
BNIP2
Motif
Other DBs
NCBI-GeneID:
102158045
NCBI-ProteinID:
XP_020922417
UniProt:
A0A8D0S776
LinkDB
All DBs
Position
12:14571712..14580740
Genome browser
AA seq
659 aa
AA seq
DB search
MRDKGGSAAPAGTPPGRLRPAGTPPPVVSNASFSFSLRLYNFATLIAVLSGASLQVIRLA
FGAPRFGGSRAGPLSGKKFGNPGEKLVKKKWNLDELPKFEKNFYQEHPDLARRTAQEVET
YRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMV
GVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACR
LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD
MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQ
IVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDK
SQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARS
TKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGLKDDRRD
RYSAGKRGGFNTFRDRENYDRGYSSLLKRDFGAKTQNGVYSAANYTNGSFGSNFVSAGIQ
TSFRTGNPTGTYQNGYDSTQQYGSNVPNMHNGMNQQAYAYPATAAAPMIGYPMPTGYSQ
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgcgagacaaagggggaagcgccgccccagcgggaacgccgcccggccgactccgcccg
gcagggactcctcccccggtagtctccaacgcctccttttctttttccttacgtttatat
aattttgctaccttgatcgcggtcctttctggggcatctctccaagtcattcggcttgcg
tttggtgcgcctcgatttggaggaagtagggcagggcccttatctggaaagaagtttgga
aaccctggggagaaactggttaaaaagaagtggaatcttgatgagctgcccaaatttgag
aagaatttttatcaagaacaccctgatttggctaggcgaacagcacaagaggtagagaca
tacagaagaagcaaggaaattacagttagaggtcacaactgcccaaagccagttctgaat
ttttatgaagcaaactttcctgcaaacgtaatggatgtgattgcgaggcagaactttact
gaacccactgctattcaagctcagggatggcctgttgctctaagtggattggatatggtt
ggggtagcacaaactggatctgggaaaacattatcttatttgctccctgctattgtccac
atcaatcatcagccattcctagagagaggtgatggacctatttgcttggtgctggcacca
actcgagaactggcccaacaggtacagcaagtagctgctgaatactgtagagcgtgtcgc
ttgaagtccacctgcatctacggtggtgctcctaagggaccacagatacgtgatttggag
agaggtgtggaaatctgtatcgcgacacctggaagactgattgactttttagaatgtggg
aaaaccaatctaagacggaccacctaccttgtccttgatgaagcagatagaatgctggat
atgggattcgaaccccaaataaggaaaattgtggatcagataagacctgataggcaaacc
ctcatgtggagtgctacttggccaaaagaagtaagacagctcgctgaagatttcctgaaa
gactatattcatataaacattggtgcactagaactgagtgcaaatcacaacattcttcag
attgtggatgtgtgtcatgatgtggaaaaggatgaaaaacttattcgcctaatggaagag
atcatgagtgagaaggaaaataaaaccattgtttttgttgaaaccaaaagaagatgtgat
gaacttactaggaaaatgaggagagatgggtggcctgccatgggtatccatggtgacaaa
agtcaacaggaacgtgactgggttctaaatgaattcaaacatggaaaagctcctattctg
attgctacagatgtggcctccagagggctagatgtggaagatgtgaaatttgtcatcaat
tatgactaccctaactcctcagaggattatattcatcgaattggaagaactgcccgcagt
accaaaacaggcacagcatacactttctttacacctaataacataaagcaagtgagcgac
cttatctctgtgcttcgtgaagctaatcaggcaattaatcccaagttgcttcagttggtc
gaagacagaggttcaggtcgttccaggggtagaggaggcctgaaggatgaccgtcgggac
agatactctgcgggcaaaaggggtggatttaatacatttagagacagggaaaattatgac
cgaggttactctagtttgcttaagagagattttggagcaaaaactcagaatggtgtttac
agtgctgcaaattacaccaatgggagctttggaagtaattttgtgtctgctggtatacag
accagttttaggactggtaatccaacagggacttaccagaatggttatgatagcactcag
caatatggaagtaatgttccaaatatgcacaatggtatgaaccaacaggcatatgcatat
cctgctactgcagctgcacctatgattggttatccgatgccaacaggatattctcaataa
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