Sus scrofa (pig): 102160320
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Entry
102160320 CDS
T01009
Symbol
COL25A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102160320 (COL25A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssc00536
]
102160320 (COL25A1)
Glycosaminoglycan binding proteins [BR:
ssc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102160320 (COL25A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF1467
Motif
Other DBs
NCBI-GeneID:
102160320
NCBI-ProteinID:
XP_020957343
Ensembl:
ENSSSCG00000024449
LinkDB
All DBs
Position
8:112866597..113335765
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AA seq
657 aa
AA seq
DB search
MLMKKQAGKGGGREPGSEDPSPARQRCVRAVPPCAVLAALLSVVALMSCLYLGVKTNDLQ
ARIAALEAAKGDPSIRLLPDCLDQLKAVVQEKVERLLAQKSYEHMAKIRIAREAPSECNC
PAGPPGKRGKRGQRGESGPPGQPGPQGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQ
LIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLG
PPGQKGSVGAPGIPGMNGQRGEPGLPGAVGQHGIPGPKGEPGERGEKGDAGENGPKGDTG
EKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGXPGLPGLPGT
KGERGEAGPPGRGDRGEPGAPGPKGKQGESGTRGPKGSKGDRGDKGDSGALGPRGPPGQK
GDQGATEIIDYNGNLHEALQRITTLTVTGPPGPPGPQGLQGPKGEPGSPGVPGVDGEQGL
KGSKGDMGDPGMPGEKGGIGLPGLPGANGMKGEKGDSGLPGPQGPSIIGPPGPPGPHGPP
GPMGPHGLPGPKGTDGPMGPHGPAGPKGERGEKGAMGEPGPRGPYGLPGKDGEPGLDGFP
GPRGEKGDLGEKGEKGEKGKKGKKGPKGEKGEQGAPGLDAPCPLGPDGLPMPGCWQK
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgctgatgaagaagcaagcagggaaaggaggggggcgggaaccgggctctgaggacccg
agcccagcccggcagcgttgtgtccgggccgtgcccccgtgcgcggtcctggccgccctc
ctgtcagtggtggccttgatgtcttgtctctacctgggggtgaaaaccaacgacctccag
gcgaggatcgccgctctcgaagctgccaaaggggacccttccatccgtctgctgcctgat
tgtctggatcagctgaaagcagtggtgcaagaaaaagtggagcgactactggctcagaaa
tcctatgaacatatggctaaaataagaattgcaagagaagcaccttcagagtgcaactgc
ccggcagggcctccagggaagagaggtaagaggggccaaagaggagaatctggtcctcct
ggtcagccgggtcctcagggccctcctggtccaaaaggtgataagggagaacaaggcgat
cagggacctcggatggtgtttcctaaaatcaatcatgggtttctctctgctgatcagcag
ctcattaaacgccgcctgattaagggtgaccaaggacaggctgggccgccaggccctcca
ggtcccccaggcccaagagggcctcctggggatacagggaaagacggcccccgcggaatg
ccaggagtgcccggtgaaccagggaagccaggagaacaaggcttgatgggtcctctgggg
cctccaggacaaaagggttctgttggagcacctggaattccagggatgaatgggcaaagg
ggtgagcctgggttgcctggagcagtaggacagcatggtataccagggccaaagggagaa
cctggagaacgaggagaaaagggagatgctggagagaatggccccaaaggcgacacaggc
gaaaagggagaccctggatcatctgcggctggaattaagggagaacccggagaatctggt
cgtccagggcaaaagggtgaaccagggcttcctgggcttcctggacttccggggataaag
ggagaaccaggtttcattggtcctcaaggangaccaggcttaccagggttaccaggaaca
aagggtgaacgtggggaggcagggcctcctggaagaggggatcgaggggagcctggagcc
cctggaccaaaggggaaacaaggtgaatcaggaactagaggcccaaaggggtcaaagggt
gatcgtggagacaaaggggactctggagccctgggaccaaggggtccgcctggtcaaaag
ggggatcaaggagccactgagatcatagactacaatggcaacctccacgaagccttgcaa
agaattaccaccttaactgtcacgggtccccctggaccacctggacctcaaggattacaa
gggccaaagggagaaccaggatctccaggagtcccaggagttgatggagagcagggactc
aaaggctcaaagggggacatgggggatccaggcatgccaggtgaaaaaggaggaattggt
cttcctggattgccgggcgccaatggaatgaaaggagaaaaaggagactccggattgcca
ggtcctcagggtccttccatcataggcccaccaggcccaccgggtccccacggcccacca
ggccctatgggaccccatggacttcctggaccgaagggtaccgatggccctatgggaccc
catggccctgcaggtcccaaaggagaaagaggtgaaaaaggagctatgggagaaccagga
ccccgagggccttacggtctgcccgggaaagatggagagcctggtcttgatggttttcct
ggtccacgaggagagaagggtgatctgggagaaaagggggaaaagggggaaaagggaaag
aaaggcaaaaaggggcctaaaggggagaaaggagaacagggtgctcctggattagatgca
ccctgcccgttggggccggatggattgcctatgcctggctgctggcaaaagtga
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