KEGG   Sus scrofa (pig): 102163961
Entry
102163961         CDS       T01009                                 
Symbol
TNN
Name
(RefSeq) tenascin-N isoform X1
  KO
K06252  tenascin
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04151  PI3K-Akt signaling pathway
ssc04510  Focal adhesion
ssc04512  ECM-receptor interaction
ssc04518  Integrin signaling
ssc05165  Human papillomavirus infection
ssc05206  MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    102163961 (TNN)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    102163961 (TNN)
   04518 Integrin signaling
    102163961 (TNN)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    102163961 (TNN)
 09160 Human Diseases
  09161 Cancer: overview
   05206 MicroRNAs in cancer
    102163961 (TNN)
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    102163961 (TNN)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:ssc00536]
    102163961 (TNN)
Glycosaminoglycan binding proteins [BR:ssc00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   102163961 (TNN)
SSDB
Motif
Pfam: fn3 Fibrinogen_C Fn3_Dep-1_3rd Fn3_PBP1 FN3_DSCAM-DSCAML_C Fn3_Dep-1_2nd DUF4998 EGF_TEN EGF_Teneurin Pur_ac_phosph_N Fn3_Dep-1_4th Fn3_VIN3 EGF_2 DUF7949 EGF_Tenascin Packaging_FI
Other DBs
NCBI-GeneID: 102163961
NCBI-ProteinID: XP_020919317
UniProt: F1S708
LinkDB
Position
9:117174743..117244041
AA seq 1472 aa
MGLQEMFCFLLALLFGSVLLVASAPATLESPGCSNKEQQVTVSHTYKIDVPKSALVQVEA
DPQPLSDDGTSLLAPGETEEQNIIFRHNIRLQTPQKDCELAGSVQDLLARVKKLEEEMAE
VKEQCSAQRCCPRAAGLSHHCSGHGTFSPVTCSCHCEQGWEGADCERPACPGACSGHGQC
VDGRCLCEQPYVGIDCAYPACPENCSGHGACVRGVCQCHEDFTSEDCSERRCPGDCSGHG
FCDTGECYCEEGFTGLDCSQVVAPQGLQLLKSTEDSLLVSWEPSSQVDHYLLSYYPLGKE
RSVKQIQVPKEQHSYEILGLLPGTKYIVTLRNVKKEISSSPQHLLATTDLAVLGTAWVTD
ETENSLDVEWENPSTEVDYYKLQYGPLTGQEVAEVTVPKSSDPKSRYDITGLQPGTEYKI
TVVPMRGDLEGKPILLNGRTEIDSPTNVVTDQVTEDTAVVSWDPVRAVIDKYVVRYISAD
GETKDTAVPKEQSSTVLTGLKPGEAYEVYVWAERGSQESKKADTNALTEIDSPKNLVTDL
VTENTATVSWDPVQADIDRYLVRYTSADGDTREVPVGKEKSSTVLTGLRPGVEYTVHVWA
QKGDRESGKADTTAPTEIDSPKNLVTNQVTENTATVSWDPVQAVIDRYLVRYTSADGDTR
EVPVGKEQSSTVLTGLRPGMEYTVHVWAQKGDRESGKADTMAPTDLDSPKNLVTTQVTEN
TATVSWDPVQAVIDRYLVRYTSADGDTREVPVGKEQSSTILTGLRPGVEYTVHVWAQKGD
RESGKADTTAPTDLDSPKNLVTTQVTENTATVSWDPVQAVIDRYLVRYTSADGDTREVPV
GKEQSSTILMGLRPGVEYTVHVWAQKGDRESRKADTTAPTDIDSPKNLVTTQVTENTATV
SWDPVQAVIDRYLVRYTSADGDTREVPVGKEQSSTVLTGLRPGVEYTVHVWAQKGDRESR
KADTTAPTDIDSPKNLVTTQVTENTATVSWDPVQAVIDRYLVRYTSADGDTREVPVGKEQ
SSTVLTGLRPGMEYTVHVWAQKGDRESKKADTMAPTEIDSPQNLVTTRVTENTATVSWDP
VQAVIDRYLVRYTSADGDTREVPVGKEQSSTVLMGLRPGVEYTVHVWAQKGDRESRKADT
TALTDIDPPQNLRPSSVTQSSGVLTWKPPSAQIDGYILTYQFPDGTVKEVQLGRGDQRFE
LQGLEQGVTLPVSLVAFKGDRRSRSISTTLSTVGARFPHPSDCSQVQQNSNVASGLYTIY
LHGDASRPLQVYCDMDTDGGGWIVFQRRNTGQLDFFKRWRTYVEGFGDPMKEFWLGLDKL
HNLTTGTPTRYEVRVDLQTANESAFAIYDFFQVASSKERYRLTVGKYRGTAGDALTYHNG
WKFTTFDRDNDIALSNCALTHHGGWWYKNCHLANPNGRYGETKHSEGVNWEPWKGHEFSI
PFVELKIRPHGYSGEHVLGRKKRTLGESSRTF
NT seq 4419 nt   +upstreamnt  +downstreamnt
atgggtctccaggagatgttctgcttcctcctggcactcctgtttggctctgtgctcttg
gtggcctcggccccggccactctcgagtctcctggctgcagcaacaaggaacaacaggtc
actgtcagccacacctacaagattgatgtgcccaagtctgccctggtccaggtggaggct
gaccctcagcccctcagtgatgatgggacctcactcctggctccaggggaaactgaggaa
cagaatatcatcttcaggcacaacatccgcctgcagactccacagaaggactgcgagctg
gcaggtagtgttcaggacctcctggctcgggtgaagaagctggaggaagagatggcagag
gtgaaggagcagtgtagtgcccagcggtgctgcccacgagctgctggtctgagtcaccac
tgcagcggccatgggactttctccccggtcacctgcagctgccactgcgagcagggctgg
gagggcgcggactgcgagcggcccgcctgccccggggcgtgcagcggccacgggcagtgc
gtggacggcagatgcctgtgtgaacagccctacgtggggatcgactgcgcctaccccgcc
tgcccggagaactgcagcgggcacggcgcatgcgtgcgcggcgtctgccagtgccacgag
gacttcacgtcggaggattgcagcgagcgccgctgcccgggtgactgtagcggccacggc
ttctgcgacacgggcgagtgctactgcgaggagggcttcaccggcctcgactgctcccag
gtggttgccccccagggcctgcagttgctcaagagcaccgaggattccctgctggtgagc
tgggagccctccagccaggtggaccactacctcctcagctactaccccctggggaaggag
cgctctgtgaagcagatccaagtgcccaaggagcagcacagctatgaaatcctcggttta
ctgcctggaaccaagtacattgtcaccctgcgcaacgtgaagaaagagatttctagcagc
ccacagcacctactcgccaccacagatcttgctgtgcttggcaccgcctgggtgacagat
gagactgagaactccctcgacgtggagtgggagaacccctcaacggaagtggattactac
aagctgcagtatggccccctgacaggccaagaggtggccgaggtcaccgtgcccaagagc
agtgaccccaagagccgatatgacatcacaggtctgcagccggggacggagtataagatc
acagttgtccccatgaggggggacctcgagggcaagccaattctcctgaatggcaggaca
gaaatcgatagtccaaccaatgtagtcactgatcaagtgacagaagacacagcggtggtg
tcctgggacccagtccgggctgtcattgataagtatgtggtgcgctacatctctgctgat
ggggagactaaggacacagcggtacccaaggagcagagcagcactgtcctgacgggcctg
aagcctggagaggcttatgaagtctacgtgtgggccgagaggggcagccaggaaagcaag
aaggccgacaccaacgccctcacagaaatcgatagccccaaaaacctggtgaccgacctg
gtgacagagaacacggccaccgtctcctgggacccagtgcaggccgacatcgacaggtac
ctggtgcgctacacctctgctgacggagacaccagggaggtgccagtggggaaagagaag
agcagcaccgtcctgacgggcctgaggccgggcgtggagtacacggtccacgtgtgggcc
cagaagggggaccgggagagtgggaaggctgacaccacagccccgacagaaattgacagc
cccaaaaacctggtgaccaaccaggtgacagagaacacagccaccgtctcctgggacccg
gtgcaggctgtcatcgacaggtacctggtgcgctacacctctgctgacggagacaccagg
gaggtgccagtggggaaggagcagagcagcaccgtcctgacgggcctgaggccgggcatg
gagtacacggtccacgtgtgggcccagaagggggaccgggaaagcgggaaggctgacacc
atggccccgacagaccttgacagccccaaaaacttggtgaccacccaggtgacagagaac
acagccaccgtctcctgggacccggtgcaggccgtcatcgacaggtatctggtgcgctac
acctctgctgacggagacaccagggaggtgccagtggggaaggagcagagcagcaccatc
ctgacgggcctgaggccgggcgtggagtacacggtccacgtgtgggcccagaagggggac
cgggagagcgggaaggccgacaccacggccccgacagaccttgacagccccaaaaacttg
gtgaccacccaggtgacagagaacacagccaccgtctcctgggacccggtgcaggccgtc
atcgacaggtacctggtgcgctacacctctgctgacggagacaccagggaggtgccagtg
gggaaggagcagagcagcaccatcctgatgggcctgaggccgggcgtggagtacacggtc
cacgtgtgggcccagaagggggaccgggagagcaggaaggccgacaccacggccccgaca
gacattgacagccccaaaaacctggtgaccacccaggtgacagagaacacagccaccgtc
tcctgggacccggtgcaggccgtcatcgacaggtacctggtgcgctacacctctgctgat
ggagacaccagggaggtgccagtggggaaggagcagagcagcaccgtcctgacgggcctg
aggccaggcgtggagtacacggtccacgtgtgggcccagaagggggaccgggagagcagg
aaggccgacaccacggccccgacagacattgacagccccaaaaacctggtgaccacccag
gtgacagagaacacggccaccgtctcctgggaccccgtgcaggctgtcatcgacaggtat
ctggtgcgctacacctctgctgacggagacaccagggaggtgccagtggggaaggagcag
agcagcaccgtcctgacgggcctgaggccaggcatggagtacacggtccacgtgtgggcc
cagaagggggaccgggagagcaagaaggctgacaccatggccccgacagaaattgacagc
ccccaaaacctggtgaccacccgggtaacagagaacacggccaccgtctcctgggacccg
gtgcaggccgtcatcgacaggtacctggtgcgctacacctctgctgatggagacaccagg
gaggtgccagtggggaaggagcagagcagcaccgtcctgatgggcctgaggccaggcgtg
gagtacacggtccacgtgtgggcccagaagggggaccgggagagcaggaaggccgacacc
acagccctgacagacattgaccctccccaaaaccttcgtccgtcttctgtaacacagtct
agtggggtattgacctggaaacccccatctgctcagatcgatggctatattctgacctac
caattcccagatggcactgtcaaggaggtgcagcttggacgaggggaccagaggtttgag
ttgcaaggccttgagcagggtgtcaccctacctgtctccttggttgcctttaagggtgat
cgccgtagcaggagtatatccaccaccctttccacagttggtgcccgttttccacaccct
tcggactgcagtcaagttcagcagaacagcaatgtcgccagtggcctctacaccatctac
ctgcacggggacgccagccggcccctgcaggtgtactgtgacatggacacggatggaggt
ggctggattgtcttccagaggcggaacaccgggcagctggacttcttcaagcgctggcgg
acctatgtggaaggcttcggggaccccatgaaggagttctggcttggactcgacaagctg
cacaacctcaccacaggcacgcctacccggtacgaggtgagagtggacctccagacggcc
aatgaatctgcctttgccatatatgacttcttccaagtggcctccagcaaggagcggtac
aggctcacggtcgggaaataccgaggcaccgcaggtgacgcgcttacctaccacaatgga
tggaagtttacaacctttgacagagacaacgatatcgccctcagcaactgtgcgctgaca
catcacggtggctggtggtacaagaactgccacttggccaaccccaatggcagatatggg
gagaccaagcatagtgagggggtgaattgggagccctggaaaggacacgaattctccatt
ccttttgtggagttgaagattcgcccccatggctacagtggggagcatgtcctgggcaga
aagaagcggacactaggagaaagttcgagaacattttga

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