Sus scrofa (pig): 106504149
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Entry
106504149 CDS
T01009
Symbol
VPS50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssc04131
]
106504149 (VPS50)
Membrane trafficking [BR:
ssc04131
]
Protein recycling
Others
EARP complex
106504149 (VPS50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
SAC9_GBDL_2nd
Motif
Other DBs
NCBI-GeneID:
106504149
NCBI-ProteinID:
XP_020958043
Ensembl:
ENSSSCG00000028708
UniProt:
A0A5G2QKW5
A0A4X1TYZ3
LinkDB
All DBs
Position
9:73074878..73215833
Genome browser
AA seq
984 aa
AA seq
DB search
MVVLSDLLILCGRVYPRGSDMQKIKSLMTRQGLKSPPESLSDLGAIESLRVPGKEEFREL
REQPSDPQAEQELINSIEQVYFSTDSFDIVRYELEKLPPVLNLQELEEYRDKLKQQQAAV
SKKVADLILEKQPAYVKELERVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLAN
QRKRQLLIGLLKSLRTIKTLQRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCIS
ELNSKLQDTLEQIEEQLDVALSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQA
IHNTVFQVVLGYVELCAGNTDTKFQKLQYKDLCTHVTPDSYIPCLADLCKALWEVMLSYY
RTMEWHEKHDNEDTTSASEGSNMMGTEETNFDRGYIKKKLEHGLTRIWQDVQLKVKTYLL
GTDLSIFKYDDFIFVLDIISRLMQVGEEFCGSKSEVLQDSIRKQSVNYFKNYHRTRLDEL
RMFLENETWELCPVKSNFSILQLHEFKFMEQSRSPSVSPSKQPSSTSSKTVTLFEQYCSG
GNPFEIQANHKDEETEDVLASNGYESDEQEKSAYQEYDSDSDVPEELKRDYVDEQTGDAP
VKSVSRETLKSRKKSDYSLNKVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMS
QLFDYYLYAIYTFFGRNDSLESTGLGLSSSRLRTTLNRIQESLIDMEVSADPTATLTAAE
ERKEKVPSPHLSHLVVLTSGDTLYGLAERVVATESLVFLAEQFEFLQPHLDAVMPAVKKP
FLQQFYSQTVSTASELRKPIYWIVAGKAIDYEQMLLLMANVKWDVKEIMSQHNIYVDALL
KEFEQFNMRLNEVSKKVRIPLPVSNILWEHCIRLANRTIVEGYANVKKCSNEGRALMQLD
FQQFLMKLEKLTDIRPIPDKEFVETYIKAYYLTENDMERWIKEHREYSTKQLINLVNVCL
GSHINKKARQKLLSAVDDIDRPKR
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgctgagtgatttgttaattctctgcggcagggtataccctcgcggttccgac
atgcaaaaaatcaaatctctaatgacccgacagggtctgaaaagtcctcccgagagcctc
agtgatcttggtgccattgagagtctccgggtccccggaaaggaggaatttcgagagctt
cgagaacaacctagtgaccctcaagctgaacaagaactaattaatagcattgaacaagtg
tatttttctacggactcatttgatattgttagatatgaactggagaagctccctcctgtt
ctcaatttgcaagaattagaggagtacagagacaaattgaagcaacagcaagctgcagtc
tctaaaaaagtagcagatttaatccttgaaaagcagcccgcttatgtaaaggaacttgaa
agagttacctcattacagacaggtcttcagttagctgccgttatctgcacaaatgggagg
agacacttgaatattgcaaaggaaggttttacccaagctagtttaggccttcttgcaaat
caaaggaaacgtcagttgctgattggacttctgaaatctctgagaactataaaaacattg
caaagaacagatgtccgcctaagtgaaatgctggaggaggaagattatccaggggctatt
cagctgtgcctggaatgtcagaaagctgctagcacttttaaacattacagttgtataagt
gagctgaattcaaagctgcaagatactttagaacaaattgaggaacagttggatgttgct
ctgtctaaaatctgcaagaattttgacattaatcattacaccaaggttcaacaagcttat
cgacttcttggaaaaacacagacagcaatggatcaacttcatatgcacttcacccaagcc
attcataataccgtgtttcaagttgttcttggttatgtggaactatgtgcaggaaacaca
gatacaaaattccaaaagctgcaatacaaggatctctgtacacatgttacaccagatagc
tacattccatgccttgctgacctttgcaaagcactgtgggaggttatgctcagctattat
aggactatggaatggcatgagaaacatgacaatgaggatactacttctgcttctgaaggg
agtaatatgatgggtactgaagaaacaaattttgatcgtggctacataaaaaagaagtta
gaacatggacttacacgaatatggcaggatgttcagctaaaagtaaaaacctacttgctt
ggaactgatttgtctatattcaaatatgatgatttcatctttgttttggatataatcagc
aggttgatgcaagttggagaagaattctgtggtagcaagtctgaagttttgcaagattct
attagaaaacaaagtgtcaattattttaagaactaccatagaacacggcttgatgaactg
agaatgtttctagagaatgagacctgggaactttgtcctgttaagtcaaatttcagcatc
ttgcaacttcatgaatttaaattcatggaacagtcacgttccccatcagtttcacctagt
aagcagccatcctcaacctcctcaaaaacagtgaccttgtttgagcagtactgtagtggt
gggaatccatttgaaattcaggccaaccacaaagatgaagaaacagaagatgtcctggct
tctaatgggtatgagtctgatgaacaagaaaaaagtgcctatcaggagtatgacagcgac
agtgatgttcctgaggaactaaaacgagattatgttgatgagcagacaggcgatgctcct
gtgaaaagtgtttctcgagagaccctaaaaagcaggaagaaatcagattacagtctaaat
aaagtgaatgcacccatcttaacaaatacaacattgaatgtaataagacttgttggtaaa
tatatgcagatgatgaacattcttaaaccaattgcttttgatgttatccatttcatgtct
cagctatttgattattacttgtatgcaatatataccttttttggtcggaatgattcattg
gaatcaacaggactaggccttagtagtagtagactaagaacaactctaaacagaatacag
gagagtctcattgatatggaagtttcagctgatcctactgccacacttacagcagcagaa
gagagaaaggagaaggtaccgagccctcacctcagtcacctggtggttttgacatctgga
gatacattgtatggcttggcggaaagagtggtagccacagaatccttggttttcttggca
gaacagtttgagttccttcagcctcatctggatgctgtgatgcctgcagtgaaaaaaccc
tttcttcagcagttctattctcagacagtctccacggccagtgaactacgcaaaccaatt
tactggattgtggccggtaaagccattgattatgaacagatgctgctcctaatggctaat
gtgaaatgggatgtaaaagaaattatgtcacagcacaacatttatgtagatgcactgtta
aaggaatttgagcagtttaacatgaggttaaatgaagtttctaagaaagttcggataccc
ctgcctgtgtctaatatcctttgggaacattgcatacgcctggctaatagaactattgta
gaaggatatgccaacgtcaagaagtgcagtaatgagggtcgtgccttgatgcaattggat
tttcaacagtttttaatgaaacttgaaaaactcacagatatccggcccattcctgataaa
gaatttgtggaaacctatattaaagcctactacctaactgagaatgacatggaacgctgg
atcaaagagcatagggagtattcaacgaagcagctgatcaatctggtaaatgtttgcctg
ggatcacacatcaataagaaagcaagacagaaacttctctcagctgtagatgacatagac
agacccaaaagataa
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