KEGG   Sus scrofa (pig): 110259740
Entry
110259740         CDS       T01009                                 
Symbol
TBP
Name
(RefSeq) TATA-box-binding protein
  KO
K03120  transcription initiation factor TFIID TATA-box-binding protein
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03022  Basal transcription factors
ssc05016  Huntington disease
ssc05017  Spinocerebellar ataxia
ssc05165  Human papillomavirus infection
ssc05166  Human T-cell leukemia virus 1 infection
ssc05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    110259740 (TBP)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    110259740 (TBP)
  09172 Infectious disease: viral
   05166 Human T-cell leukemia virus 1 infection
    110259740 (TBP)
   05165 Human papillomavirus infection
    110259740 (TBP)
  09164 Neurodegenerative disease
   05016 Huntington disease
    110259740 (TBP)
   05017 Spinocerebellar ataxia
    110259740 (TBP)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ssc03000]
    110259740 (TBP)
   03021 Transcription machinery [BR:ssc03021]
    110259740 (TBP)
Transcription factors [BR:ssc03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   TATA-binding proteins
    110259740 (TBP)
Transcription machinery [BR:ssc03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     110259740 (TBP)
  RNA polymerase III system
    TFIIIB
     110259740 (TBP)
  RNA polymerase I system
    SL1/TIF-1B
     110259740 (TBP)
SSDB
Motif
Pfam: TBP VPS13_N TFIIA DDHD EPL1 TMEM51 STAC2_u1 Tra1_central DUF7518 Presenilin PAT1 CLN3 Hid1 Tim54 SpoIIP
Other DBs
NCBI-GeneID: 110259740
NCBI-ProteinID: XP_020941142
LinkDB
Position
1:complement(5669..23675)
AA seq 269 aa
MDQNNSLPPYAQGLASPQGAMTPGIPIFSPMMPYGTGLTPQPIQNTNSLSILEEQQRQQQ
QQQQQQQQQQQQQQQQQQQQQQQATVAAVQQSTSQQATQAASGQTPQLFHSQTLTTAPLP
GTTPLYPSPMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYN
PKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDF
KIQNMVGSCDVKFPIRLEGLVLTHQQFSR
NT seq 810 nt   +upstreamnt  +downstreamnt
atggatcagaacaatagccttccaccttacgctcagggcctggcttcccctcagggtgcc
atgactcctggaatcccaatctttagtccaatgatgccttatggcacaggactgactcca
cagcctattcaaaacaccaacagtctatccattttggaggagcagcaaaggcagcagcag
cagcaacagcagcagcagcagcagcaacagcagcagcagcagcagcagcagcagcagcaa
cagcagcaggcaacagtggcagccgtccagcagtcgacgtcccagcaggcgacccaggcg
gcctcgggccagactccacagctcttccactcacagactcttacgactgcacccttgcct
ggcaccactcccctgtatccctcccccatgacccccatgacccccatcacccctgccacg
ccagcatcggagagctctgggattgtgccacagctgcaaaatattgtatccacagtgaat
cttggttgtaaacttgacctaaagaccattgcacttcgtgcccgaaatgctgaatataat
cccaagcgatttgctgctgtaatcatgagaataagagaaccccggaccaccgcactgata
ttcagctctgggaaaatggtgtgcacgggagccaagagtgaagaacagtccagactagca
gcaagaaaatatgccagagttgtacagaagttgggttttccagctaaattcttggacttc
aagattcagaacatggtggggagctgtgatgtgaagttccctataaggttagaaggcctt
gtgcttacccaccaacagttcagtaggtaa

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