Sus scrofa (pig): 110260954
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Entry
110260954 CDS
T01009
Symbol
CHD9
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 9
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ssc03036
]
110260954 (CHD9)
Chromosome and associated proteins [BR:
ssc03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
110260954 (CHD9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_CHD1_Hrp3
Motif
Other DBs
NCBI-GeneID:
110260954
NCBI-ProteinID:
XP_020949833
LinkDB
All DBs
Position
6:complement(31829870..32071975)
Genome browser
AA seq
2900 aa
AA seq
DB search
MTDPMMDFFDDANLFGETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQGTP
THQKMTDYEQLNQFDSMKFHQVNQSFGSPAEHVLSPHSQFNCSPIHPQNQPNGLFPDVAD
GSPMWGHQTATSISNQNGSPFHQGHSHSMHQTKSFVAHHDFALFQANEQQTQCTSLRSQQ
NRNNLNPGQNSLSQSKNFMDVNVSGPHRVSVNHPSQINNASTSQQSLSMQQFSQTSNPSV
HFLKCSNHQEGNFNGPSPNMTSCSVSNSQQFSSHYSFSSNHVSPNGLLQSSAVLAPNHTN
QTLSDFTGSNSFSPHRGIKQESTQHMLNPNTSLNSNNFQMLHSSHPQGNYSNSKLSPVHM
NFPDPVDSGNQMGHFSDHVETNGFSSLEENLLHQVESQTEPFTGLDPEDLLQEGLLPQFD
ESAFGQDNPSHVLDHDLDRQFTSHLITRPSDMAPTQLHSQARSWHSPLSNHQHLHDRNRL
CLQRQPPSSKKSDGSGTYTKLQNSQVRIMSEKKQRKKVESESKQEKANRIISEAIAKAKE
RGERNIPRVMSPENFPSASVEGKEEKKGRRMKSKPKDKESKKPKPCSKLKEKTKIGKLII
TLGKKQKRKNESSDEISDAEQMPQHTFKEEDSQKRRSNRQIKRKKYAEDTEGKQSEEDVK
GSMKIKKNSAPLPGEQPLQLFVENPSEEDAAIVDKILSSRIIKKEVSPGVMIDTEEFFVK
YKNYSYLHCEWATEQQLLKDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYVEVDRVL
EVSFCEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQLQALRPDTRHLDR
PPSNIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFL
YEILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMIQQYEMYFRDSQ
GRIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLE
HKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAILKPMML
RRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNLVNTMME
LRKCCNHPYLIKGAEEKILGEFRDTYNPTASDFHLQAMIQSAGKLVLIDKLLPKMKAGGH
KVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTR
AGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDR
ASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCEEDI
DQILLRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIDAISG
RNSLVIDTPRIRKQTRPFSATKDELAELSEPESEGEEKPKLRRPCERSNGYGRTECFRVE
KNLLVYGWGRWREILSHGRFKRQLNEHDVEIICRALLAYCLVHYRGDEKIKGFIWDLITP
TEDGQTRELXNHLGLSAPVPRGRKGKKVKTQTSSFDIQKAEWLRKYNPEQLLQDEGYKKH
IKHHCNKVLLRVRMLYYLKQEVIGSECQKVFDGVDASDIDVWVPEPDHSEVPAEWWDFDA
DKSLLIGVFKHGYEKYNTIRADPALCFLERVGKPDEKAVAAEQRANDYMDGDVEDPEYRP
APAIFKDDIEDDVSSPGDLVIADGDGQLMEGDKIYWPTQSALTTRLRRLITAYQRTNKNR
QIQQIQPTFSVPASVMQPLYEEATLNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDP
DRGQFDWTKFRAMARLHKKTDDSLEKYLYAFMSMCRRVCRLPSKEELVDPSIFIQPITEE
RASRTLYRIELLRKVREQALRHPQLFERLKLCHPNPDLPVWWECGPHDRDLLIGAAKHGV
SRTDYHILRDPELSFMAAQRNYSQSKMAHSRTSTPLLQQYQVALSASPLTSLPRLLDPKG
IILEDVKVKSENLKEEPQSSEEESMSSEETRTLIKSEPVSPKNGVLPQATGDQKSGGKGE
TDRRMVAARTEPLTPNPASKKRRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSSCSH
SRSGSSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSEEEEVQKREGTSHMKAYDEE
SVASLSTTQDETQDSFQMNNGTPESAYILQGGYMLAASYWPKDRVMINRLDSICQTVLKG
KWPSARRSYDANTVASFYTTKLLDSSGTATEYSEPSVPTPPGAGVKEEHDQSTQMSKVKK
HVREKEFTVKIKDEGGLKLTFQKQGLAQRRPLDSEDGTLGQQQYLTRLRELQGASETSLA
SFPKSMPVSGTPIQSTLGANGVILDNQPVVKKRRGRRKNVEGVDILFFNRNKPPNHVALG
LTTSQISTGINPALSYTQSQGIPDTESPVPVINLKDGTRLAGDDAPKRKDLEKWLKEHPG
YVEDLGAFIPRVQLHEGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAP
PLKDLCRFLKENAEYGVAPEWGDVVKQSGFLPESMYERILTGPVVREEVSRRGRRPKSGI
AKATAAAAAASATSISGNPLLANGLLPGVDLTTLQALQQNLQNLQSLQVTAGLMGMPAGL
SSGGEAKNVAAMFPMLLSGMTGLPNLLGMGGVLTKPTESGTEEKKGNDSKELEGKKERTE
SQTSENGGENSVSSSPSTSSTAALNTAAAANPLALNPLLLSNILYPGMLLTPGLNLHIPT
LSQSNTFDVQKNKNNDLGSSKSVEVKEEDSRARDQEDKGGTEPSPLNENSTDEGSEKADA
SSGSDSTSSSSEDSESSNED
NT seq
8703 nt
NT seq
+upstream
nt +downstream
nt
atgacagatccaatgatggacttttttgatgatgccaatcttttcggtgagaccttagaa
ggtttgtcagatgatgcatttgtacaaccaggacctgtttcactagttgatgaactgaac
ttgggtgcagaatttgaacctttgcacatagactcactgaatcatgttcaaggtactcca
acacatcagaagatgactgattatgaacaattaaatcagtttgactcaatgaaatttcat
caagttaatcagtcttttggtagcccagctgaacatgtgttatctccacactctcagttt
aattgttctccgatccatccgcagaaccaaccgaatggtttgtttccagatgtagcagat
ggcagtccaatgtggggccatcagacagctactagcatttcaaatcaaaatgggtctcct
tttcatcaaggacattctcactctatgcatcaaactaaaagctttgtggcacaccatgac
tttgccttatttcaggccaatgaacaacaaacacagtgtacttcgctacgctcacaacaa
aacagaaataatcttaacccagggcaaaactctcttagccagtctaaaaattttatggat
gttaatgtttctggtccacacagagtcagtgttaaccacccatcacagattaataatgca
tctacttcacaacaatccctttcaatgcagcagttttctcaaacgtcaaatccttcagta
cacttcctaaagtgtagcaatcatcaagaaggaaattttaatggaccttctccaaatatg
acttcttgttctgtcagtaattcacagcagttttcttcacattattccttttccagtaat
cacgtatcaccaaatggtcttcttcagtcctctgcagttcttgcacctaatcatacaaat
cagacgttatctgattttactggaagtaattccttttcacctcataggggaatcaagcaa
gaatctactcagcatatgctaaatcctaatacatcactgaattcgaataatttccaaatg
ttgcattcatcacatcctcagggtaattatagcaattcaaaattatctcctgtgcacatg
aacttcccagatcctgttgactcaggaaatcaaatgggccatttcagtgatcatgtagaa
actaatggcttttcgtctttagaagagaatttacttcatcaagtggagtctcaaactgag
ccattcacaggacttgacccagaagacctccttcaggagggtctccttccccaatttgat
gagtcagcatttggacaagataatccaagtcatgttttagatcatgaccttgatcggcaa
tttacttcacatcttataacacggccttctgatatggctccaactcagttgcatagtcag
gctcggagttggcattcaccactctctaatcatcagcatctacatgacagaaatcgcctg
tgtttacagcgacagcctccatcttccaagaagagtgatggttctgggacatatactaag
ttgcagaattcccaggtgaggatcatgtccgagaagaagcagagaaaaaaggtggaatca
gaaagcaagcaagaaaaggctaatcgtataatatcagaagccatagcaaaagcaaaggag
cgtggggaacgcaatattccacgagtaatgagccctgaaaactttcctagtgcttcagtt
gaaggaaaagaggaaaagaaaggtagaaggatgaaatccaagccaaaagacaaagagagc
aaaaaaccaaaaccttgttctaagttaaaagagaagacgaaaattggcaaactcattatt
acattgggtaagaaacaaaaaagaaagaatgagtcttcagatgaaatatctgatgcggaa
cagatgccacagcatacattcaaagaggaagactctcaaaaaagaagatcaaatcgacaa
attaaacgaaaaaaatatgcagaagatacagaagggaaacaatcagaagaagatgttaaa
ggctctatgaaaatcaaaaagaattcagctcctttacctggtgaacagcctttgcaatta
tttgtggagaatccaagtgaggaagatgctgcaattgtggacaaaatactatcttctaga
attataaaaaaggaagtatcgcctggagtgatgattgatacagaagaattttttgtaaaa
tacaagaattactcctatcttcactgtgagtgggcaacagagcagcagcttctgaaagat
aaaaggatccagcagaaaatcaaacgattcaaattgagacaagcacaaagagcacatttt
tttgcagatatggaagaagaaccgtttaaccctgactacgttgaagtagacagagtgtta
gaagtctctttttgtgaagacaaagatactggtgagcctgttatttactacttagtaaag
tggtgctcattaccatatgaagatagtacttgggaactaaaagaagatgtagatcttgca
aaaatagaagagtttgaacaattgcaagctttgcggcctgacacaagacatttggatcgt
cctccttctaatatttggaaaaaaatagatcaatccagggattataaaaatggcaatcaa
ctcagggaatatcaactggaaggactcaactggctcttgttcaattggtacaatagacga
aactgcattttagcagatgaaatgggtcttggcaaaaccattcagtcaattacattcctc
tacgaaatccttctgactggtataagaggacctttcctgattattgctccactttctact
attgcaaactgggagagagaatttcgtacgtggactgatattaatgttgtggtttatcat
gggagcctgattagcagacagatgatacagcaatatgagatgtacttcagggactcacag
gggcgtatcattcgaggagcttatagattccaagccatcatcaccacttttgaaatgatt
cttggaggctgtggagaacttaatgcaattgagtggcgatgtgtgattattgatgaagca
cataggttaaaaaataaaaattgtaaacttctagaaggtctgaaactcatgaatctggaa
cacaaggtgcttttgacgggcacacctctccaaaatacagttgaagaactgttcagtctt
cttcactttctggaacccttaaggtttccttctgaatcaacatttatgcaagaatttggg
gatctgaaaacagaggaacaggtgcaaaaacttcaggctatcctgaaaccaatgatgttg
agacgattgaaagaagacgtggaaaagaagttggcacctaaggaagaaaccatcattgaa
gtagaacttactaacattcaaaagaaatactaccgggctattctggagaagaacttttca
tttttatccaaaggagcagggcaaactaatgtacccaacttggttaataccatgatggag
ctcaggaagtgctgtaatcacccatatcttatcaaaggtgctgaggagaaaatacttgga
gaatttagagacacatataatccaactgcatctgattttcatcttcaagcaatgatccag
tctgctggtaaattggtccttattgataaattgcttcccaaaatgaaagcaggaggtcac
aaagtgctcatcttctctcagatggtacgctgccttgatatcctggaagactatcttata
cataaaagatatttatatgagcgaattgatggaagagtcagaggaaaccttcgacaagct
gctatagatcgatttagtaaacctgattcagatcgatttgtctttcttctgtgtacccga
gctggtgggttgggcatcaacttaactgcagctgatacgtgtataatttttgattctgat
tggaatcctcaaaatgaccttcaggcccaagctcgttgccacagaattggtcagaataaa
gcagttaaagtctaccgactagtaactcgtaattcatatgagagagagatgtttgaccga
gccagtctgaaactgggtctagataaggctgtgttacagagcatgagtggacgagaaagt
aatgttggcggtattcagcagctttccaaaaaggaaatagaagatctgcttcgaagaggt
gcttatggtgccattatggaagaagaagatgaaggctctaaattctgtgaagaagatatc
gatcagattttactacgccgtacaaaaaccattacaattgagtcagaaggtcgtgggtca
acatttgcgaaggcaagttttgttgcatctggaaaccgaacagatatttccttagatgat
cccaacttctggcaaaaatgggcaaaaaaggcagaaatagacatagatgccatcagtggt
agaaacagcttggttattgacactccaagaatcaggaagcaaacaagaccctttagtgcg
acaaaagatgaattagctgaattatctgaacctgaaagtgaaggagaagaaaagcccaaa
ctccggagaccttgtgagcgttcaaatggctatggaagaactgaatgctttagagtagag
aaaaatctgctcgtttatggatggggccgatggagagagattctatctcatggccgtttt
aaaaggcagctaaatgagcatgatgtagaaataatttgccgagccctcttagcatattgc
cttgttcactaccgaggagatgagaaaattaaaggttttatatgggatcttattactccc
actgaagatgggcagacccgagaactancaaatcacctaggtctgtcagcccctgtaccc
agaggtcgaaaagggaagaaagtaaagactcagacaagctcatttgatatacaaaaagca
gaatggcttcgaaaatacaatcctgagcagctccttcaagatgaaggctacaaaaagcat
ataaaacaccactgcaataaagttttgcttcgtgtaagaatgctgtattatctaaagcaa
gaagtcattggaagtgagtgtcagaaagtatttgatggagttgatgcaagtgacattgat
gtttgggtcccagaaccagaccactcagaagttcctgctgaatggtgggattttgatgcc
gataagtcactccttattggagtttttaaacatggttatgaaaaatataacactatccga
gcagacccagcattgtgcttcttggaaagagtggggaaacctgatgagaaagcagttgct
gcagaacagagagctaatgattatatggatggggatgtggaagatccagaatacagacct
gccccagcgatctttaaagatgacatagaggatgatgtttcctcaccaggagatcttgtt
atagcagatggagatggtcaactgatggagggtgataaaatttattggcctactcagtca
gctttaaccacacgtttgaggcgtctcatcactgcgtatcagcgtactaacaaaaataga
caaatccagcagatacaacctactttctcagtgcctgccagtgtaatgcagcctctttat
gaagaagccactcttaatcctaaaatggcagccaaaatagaaagacagcagagatggacg
agaagagaagaagctgacttttatagagttgtatctacatttggagtggtatttgatcct
gacagaggccaatttgattggacaaaatttagagctatggctaggctacataagaaaact
gatgatagtttggagaaatatttgtatgcattcatgtctatgtgtcggagggtttgtcgt
cttccttccaaagaagaattggtggatccaagtatttttatccagccaatcacagaagag
cgtgcttctaggactctgtaccgcattgagcttctaaggaaagtaagggaacaggctctc
cgacatccgcagttgtttgaacgcttgaagctttgtcatccaaatccagacttaccagtc
tggtgggaatgtggccctcatgacagggacttgctcattggagctgctaaacatggggtg
agccgaacagactatcacattctccgtgatcctgaactctcatttatggcagctcagagg
aactacagtcaaagtaagatggctcattcaaggacttctaccccccttttacagcaatat
caagtagcactttctgcttctcctcttacctctctgcctaggctcctagatcctaaaggt
attattctagaggatgtgaaagttaaaagtgaaaacctgaaagaggagcctcagtcttct
gaagaagaatctatgtcttctgaggaaaccaggacgctaataaagtctgagcccgtaagt
ccaaagaatggtgttttaccgcaggctactggagaccagaaatctggtggaaaaggtgaa
acagacagacgcatggttgcagccagaacagagcctctaactccaaacccagcttctaag
aagcggagagtccacaaaagaggatcagagtctagttctgattctgactctgattctgag
aggtcatcctgttcttccagatcatcttcttcctcgtcttcctcctcttcttgttcccac
tcgagatcaggctccagttcttcgtcctcctcctcttgttcttcagcgtcatcttcatcc
tcatcctcgtcctcctcttcctcgtcctcctcttcgtcttcatcagaagaaagcgacagt
gaagaggaggaagtccaaaagcgagaaggcacctctcacatgaaagcttatgatgaggaa
agcgttgcatcactgagcactacccaggatgagacccaggatagtttccagatgaacaat
gggactcctgagtctgcctacatcctgcaaggtggctacatgctggcagcttcatattgg
ccaaaggatcgtgtgatgatcaaccggttggacagtatttgtcaaacagttctgaaaggg
aagtggccttcagctagaagaagttacgatgccaacacagtggcttctttctataccaca
aagctgctggacagctctggcacagccacagagtacagcgagcccagcgtgcccacccct
ccaggtgccggggttaaagaagaacacgatcagtcaacacagatgtcaaaggtgaagaag
catgtacgagaaaaggagtttacagtgaaaatcaaagacgaaggagggttgaagttgaca
tttcagaagcaagggcttgctcaaagaaggccgctggacagcgaagacggcaccctaggg
cagcagcagtacctcacccggctccgggagcttcaaggtgcgtcagagaccagcctcgcc
agctttccaaaatccatgccagtatcaggtactcctattcagtcaacccttggtgccaat
ggagttatattagacaaccagcctgtagtcaaaaaaaggcgaggacggaggaagaatgtg
gaaggtgttgacatcctcttttttaacagaaataaaccacctaatcatgttgctttaggc
ttaaccacctcacagatttctacagggataaatccagcactgtcctatacacaatctcaa
ggaattcctgatacagaaagtccagttccagttattaatcttaaggatgggacaagactt
gcaggcgatgatgcaccgaagagaaaggatttggaaaaatggcttaaggagcacccaggt
tatgtggaagatttaggagcttttattcctagagtgcagctccatgaggggagacccaaa
caaaaaaggcatcgttgcagaaaccccaataaattagatgttaatagtctcactggagaa
gaacgtgttcagctaattaacagaagaaatgccagaaaggttggaggtgcatttgctccc
cctttgaaagatttgtgtcgattcctaaaagaaaatgcagaatatggagtagctcctgaa
tggggagatgtagttaagcagtctggatttcttccagaaagtatgtatgaacgtattctc
actggtcctgttgtgagagaggaagtaagcaggcgagggagacggcctaaaagtggaatt
gcgaaggccacagcggcagcagcggctgcatctgccaccagtatttcaggcaatcctttg
ttagccaatggattacttccaggtgtggatctcacaacacttcaggccttacaacaaaac
ctacaaaacttgcagtcactgcaggtgactgcagggctgatgggaatgcctgctggcctt
tcttctggaggagaagctaaaaacgtggccgccatgttccccatgctgctgtcaggaatg
actggattgccaaatctgttgggcatgggaggagtcctgacaaagcctacagaatctgga
acagaagaaaaaaagggaaatgactctaaggagctagaaggaaaaaaagaaaggacagag
agccaaacttcagagaatggtggagaaaactctgtgtcaagttctccttcaacatcctct
actgctgcattaaatacagctgcagctgccaaccccttagctcttaacccactcttacta
tctaatatactttatccagggatgcttctcactccaggccttaatcttcatattccaact
ttgtcccagtccaatacttttgatgtacagaaaaacaaaaacaatgacttaggctcgtct
aagtctgtagaagtaaaggaagaagattccagagctagagatcaggaagacaaaggagga
actgaaccgagtcctctcaatgaaaacagcacagatgagggttcagagaaagccgatgct
tcctctggatctgatagtacatcatcatcatccgaggattcagagtctagtaatgaagac
tga
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integrated database retrieval system
