KEGG   Sus scrofa (pig): 396611
Entry
396611            CDS       T01009                                 
Symbol
IRF1
Name
(RefSeq) interferon regulatory factor 1
  KO
K09444  interferon regulatory factor 1
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04625  C-type lectin receptor signaling pathway
ssc04668  TNF signaling pathway
ssc04917  Prolactin signaling pathway
ssc05133  Pertussis
ssc05165  Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04668 TNF signaling pathway
    396611 (IRF1)
 09150 Organismal Systems
  09151 Immune system
   04625 C-type lectin receptor signaling pathway
    396611 (IRF1)
  09152 Endocrine system
   04917 Prolactin signaling pathway
    396611 (IRF1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    396611 (IRF1)
  09171 Infectious disease: bacterial
   05133 Pertussis
    396611 (IRF1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ssc03000]
    396611 (IRF1)
Transcription factors [BR:ssc03000]
 Eukaryotic type
  Helix-turn-helix
   Tryptophan clusters interferon-regulating factors
    396611 (IRF1)
SSDB
Motif
Pfam: IRF
Other DBs
NCBI-GeneID: 396611
NCBI-ProteinID: NP_001090882
Ensembl: ENSSSCG00000014277
Vega: OTTSUSG00000001509
UniProt: A0FIN4 D2KC06
LinkDB
Position
2:complement(134776122..134783646)
AA seq 322 aa
MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI
HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR
KERKSKSSRDAKCKAKKKSCGESSPDTFSDGLSSSTLPDDHSSYTAQGYIGQDLDIEQAL
TPALSPCAISSTLPEWRIPVEIVPDSTSDLYNFQVSPMPSTSEAATDEDEEGKLTEDIMK
LLEQSGWQQTNVDGKGYLLNEPGAQPTAVYGDFSCKEEPEVESPGGYTGLISSDLKNVDT
SWLDNLLTPVRLPSIQAIPCAP
NT seq 969 nt   +upstreamnt  +downstreamnt
atgcccatcactcggatgcgcatgagaccctggctagagatgcaaattaattccaaccaa
atcccagggctgatctggattaataaagaggagatgatcttccagatcccatggaagcat
gctgccaagcatggctgggacatcaacaaggatgcctgcctgtttcggagctgggctatt
cacacaggccgatacaaagcaggggaaaaggagccggatcctaaaacatggaaggccaac
tttcgctgtgccatgaactccctgccagatattgaagaggtgaaggaccagagcaggaac
aagggcagctcagctgtgcgggtgtaccggatgctcccacccctcaccaagaaccagagg
aaagagagaaagtccaagtccagccgagatgctaagtgcaaggccaagaagaagtcatgt
ggggaatccagccctgataccttctctgatggactcagcagctccaccctgcctgatgac
cacagcagctacacagctcagggatacatcgggcaggacttggacattgaacaggccctt
actccagcactgtcaccgtgtgccatcagtagtactctccctgagtggcgcatcccagtg
gaaattgtaccagacagcaccagcgacctgtacaacttccaggtgtcacccatgccctct
acctctgaagctgcaacagatgaggacgaggaggggaaattaactgaggacatcatgaag
ctcctggagcagtcagggtggcagcagacaaacgtggatgggaaggggtacctgcttaat
gaacctggggcccagcccaccgctgtctatggagacttcagctgcaaggaagagccagaa
gttgaaagccctggggggtatactgggctgatatcttcagatctgaagaacgtggacacc
agctggctggacaacctgctgaccccagtcaggctgccctccatccaagccattccttgt
gcaccgtag

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