Sus scrofa (pig): 396925
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Entry
396925 CDS
T01009
Symbol
VCAM1
Name
(RefSeq) vascular cell adhesion protein 1 precursor
KO
K06527
vascular cell adhesion molecule 1
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04064
NF-kappa B signaling pathway
ssc04514
Cell adhesion molecule (CAM) interaction
ssc04518
Integrin signaling
ssc04668
TNF signaling pathway
ssc04670
Leukocyte transendothelial migration
ssc04933
AGE-RAGE signaling pathway in diabetic complications
ssc05143
African trypanosomiasis
ssc05144
Malaria
ssc05417
Lipid and atherosclerosis
ssc05418
Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
396925 (VCAM1)
04668 TNF signaling pathway
396925 (VCAM1)
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
396925 (VCAM1)
04518 Integrin signaling
396925 (VCAM1)
09150 Organismal Systems
09151 Immune system
04670 Leukocyte transendothelial migration
396925 (VCAM1)
09160 Human Diseases
09174 Infectious disease: parasitic
05144 Malaria
396925 (VCAM1)
05143 African trypanosomiasis
396925 (VCAM1)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
396925 (VCAM1)
05418 Fluid shear stress and atherosclerosis
396925 (VCAM1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
396925 (VCAM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssc04515
]
396925 (VCAM1)
04090 CD molecules [BR:
ssc04090
]
396925 (VCAM1)
04091 Lectins [BR:
ssc04091
]
396925 (VCAM1)
Cell adhesion molecules [BR:
ssc04515
]
Immunoglobulin superfamily
VCAM
396925 (VCAM1)
CD molecules [BR:
ssc04090
]
Proteins
396925 (VCAM1)
Lectins [BR:
ssc04091
]
I-type lectins (Siglecs)
396925 (VCAM1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_3
ig
I-set
Ig_2
C2-set
V-set
Ig_VEGFR-1-like_5th
C2-set_2
Ig_PDGFR_d4
Ig_4
Ig_5
Ig_6
ICAM1_3_5_D2
ICAM_N
C2-set_3
C1-set
DUF8220
HECT
Ig_TRAPPC11_1st
Motif
Other DBs
NCBI-GeneID:
396925
NCBI-ProteinID:
NP_999056
Ensembl:
ENSSSCG00000006862
Vega:
OTTSUSG00000002219
UniProt:
Q28939
LinkDB
All DBs
Position
4:complement(117496914..117511211)
Genome browser
AA seq
538 aa
AA seq
DB search
MPRNIVVIFGASNILWMVFAVSQNVKVEIFPEDKMIAQIGDSASLTCSAPDCESSLSFSW
RTQIDSPLNGKVKTNGTRSTLVMNPVSFENEHSYLCTVSCGNLKGERGIQVEIYSFPKDP
EIHWSSLPEVGKPVTVRCLVPDVYPVEKLEIELLKDNHSMVSQNFLELIDIKSKETKSLE
FTFTPTEEDIGKAIVCQATLIIDGQPSVKTTPEKMQVYISPKDPVISVNPSTSLQEGDSM
MMTCTSEGLPAPQISWSKKLDNGDQQLLSGNATLTLIAMRMEDSGIYVCEGVNPVGTNRK
EVELTVQVAPRDTTISVNPSSTLEEGSSVNMTCSSDGFPAPKILWSKKLRDGNLEPLSEN
TTLTLTSTKMEDSGIYVCEGINQAGINRKEVELIIQAAPKDLQLTAFPSESVKEGDTVII
SCTCGNVPPTLIILKKKAETGDTVLKSTDGAYTIHRARLADAGVYECESKNEIGLQLRSI
TLDVKGRESNKDYFSSELLVLYCASSLIIPAIGVIIYFARKANMRGSYSLVDAQKSKV
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgccgaggaatatcgtcgtgatctttggagcctcaaatatactttggatggtgtttgcc
gtttctcaaaatgttaaagtcgagatcttccctgaagacaaaatgattgcgcagattggt
gactccgcttccctgacttgcagcgcaccggactgcgagtcctccctgtctttctcttgg
agaactcagatagacagtcctctgaatggaaaagtgaaaactaacgggaccagatccacg
ctggtcatgaatcccgttagttttgagaatgaacactcctatctgtgcacagtctcctgc
gggaatttgaaaggggaaagaggaatccaagtggagatctactctttccccaaggaccca
gagattcactggagtagccttccagaagttgggaagccagttacagtcaggtgtctggtg
cctgacgtttacccggttgaaaagttggagatagaattactgaaggacaaccattccatg
gtgtcccagaactttctggagcttatagacataaagtccaaggaaacgaagagtttggaa
tttacctttactcctaccgaagaggatattgggaaagctattgtttgtcaagctacatta
atcattgatggtcagccctcagtaaagacaacaccagaaaaaatgcaagtctacatctca
cccaaggacccagttatatctgtgaatccctccacaagcctacaagaaggtgactccatg
atgatgacatgtaccagtgaaggtctaccagctccacagatttcctggagcaagaaatta
gataatggagatcaacagctcctttctgggaatgcaactctcactttaattgctatgagg
atggaagattctggaatttacgtgtgcgagggagttaatccggttgggacaaacagaaaa
gaggtggaattaactgttcaagttgctcccagggatacgaccatctccgtcaacccctcc
tccaccctggaggagggcagttctgtgaacatgacctgctctagtgatggctttccagct
ccgaaaatcctctggagcaagaagctgagggatgggaatctagagcctctttctgagaat
acaactctcaccttgacatctacaaaaatggaagattccggtatttatgtgtgtgaaggg
attaaccaggctggaataaacagaaaagaagttgaattaattatccaagctgctccaaaa
gatctacaacttacagcttttccttctgagagcgtcaaggaaggggacactgtcattatc
tcctgtacatgtggaaatgtccccccgactttgataatcctgaagaaaaaagcagagaca
ggcgacacggtgctaaagtctaccgatggtgcatataccatccacagggcccggctagcg
gatgcaggtgtatacgaatgtgaatccaagaatgaaattggcttgcaattaagaagtata
acgcttgacgtgaaaggaagagaaagtaacaaggactatttttcttctgaacttctcgtg
ctctattgtgcatcctccttaataatacctgccatcggggtgattatttactttgctaga
aaagccaacatgagagggtcatatagtcttgtagacgctcaaaaatcaaaagtgtag
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integrated database retrieval system
