Sus scrofa (pig): 397001
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Entry
397001 CDS
T01009
Symbol
POLR2B
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03020
RNA polymerase
ssc03420
Nucleotide excision repair
ssc05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
397001 (POLR2B)
09124 Replication and repair
03420 Nucleotide excision repair
397001 (POLR2B)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
397001 (POLR2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssc03021
]
397001 (POLR2B)
03400 DNA repair and recombination proteins [BR:
ssc03400
]
397001 (POLR2B)
Enzymes [BR:
ssc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
397001 (POLR2B)
Transcription machinery [BR:
ssc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
397001 (POLR2B)
DNA repair and recombination proteins [BR:
ssc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
397001 (POLR2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
397001
NCBI-ProteinID:
XP_003129085
Ensembl:
ENSSSCG00000022955
LinkDB
All DBs
Position
8:56232730..56283367
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGY
HLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgacgcggacgaggatatgcaatatgatgaggatgatgatgaaatcaccccagat
ttgtggcaagaggcatgctggattgttattagttcctattttgatgagaaaggcttggtc
agacaacagctggattcctttgatgagtttattcagatgtctgttcaaaggattgtggag
gatgctccacccattgacctacaggcggaagctcagcacgctagcggagaggtggaagaa
ccgccaaggtatttgctgaagtttgaacagatttacctctccaagcctacccattgggaa
agagatggagctccttccccaatgatgccaaatgaggccaggttacgaaatctcacgtac
tctgctccgctttatgttgatataacaaaaacagtcattaaagaaggtgaagaacaactc
cagacgcaacatcagaaaacttttataggaaaaattccaattatgctgcgttcaacttac
tgcctattgaatggcttaacagaccgtgatctttgtgagttaaatgaatgccccttggat
cctggtggctacttcattattaatggatcagaaaaggttctgattgctcaagagaaaatg
gcaacaaacacagtctatgtgtttgccaaaaaggactctaaatatgcctacactggagag
tgtagatcatgtctggagaattcctctcgacccaccagcactatctgggttagcatgctg
gccagaggaggacagggtgcaaaaaagagtgctattggtcagcgtattgtggcaaccctt
ccatatatcaagcaagaagttcccatcattattgtgttcagagcattgggttttgtgtct
gacagagatattttagagcatattatttatgattttgaagatccagagatgatggaaatg
gttaaaccttctcttgatgaagcttttgtcatccaagaacagaatgttgcactaaacttc
attggttcaagaggggcaaagcctggtgtcactaaagagaaaagaattaaatatgccaag
gaggtcttacagaaagaaatgctccctcatgttggtgtgagtgatttttgtgagaccaag
aaagcttatttcttggggtatatggttcataggttgcttctagcagctctgggtagaaga
gaactagatgacagagatcactatggaaacaaaagattggaccttgctggaccactcctt
gcattcttatttagaggaatgtttaagaatttgcttaaggaagtacggatctatgcacag
aagttcattgatcgaggaaaagattttaacctggagttggcaattaaaacaaggattata
tctgatggcctaaaatactctttagctactggaaactggggtgaccagaagaaagcccat
caggccagagccggcgtgtcgcaggtattaaaccgcctgacttttgcatctactctttct
caccttcgtcgtttaaactctcccattggtagagacggcaaactagcgaaaccaaggcag
ttgcacaatacattgtggggaatggtgtgtcctgctgagaccccagagggccacgctgta
ggacttgtgaagaatttagccctgatggcttatatttcagttggatctcaaccttctcca
attctagagtttttagaagaatggagtatggaaaatttagaagaaatttctcctgcagct
attgctgatgcaaccaagatctttgttaatggctgctgggtcggaatacataaagatcct
gaacaactgatgaacactctaaggaaactgcggcgccagatggacatcatcgtgtctgaa
gtttctatgatcagagatattcgtgagagagagattcggatctatacagatgcaggtcgc
atttgtaggccacttctcattgtggagaaacaaaagctacttttgaagaagagacatatt
gatcagttgaaagagagagaatataacaattacagttggcaggatcttgtggccagtggg
gtagtggagtacatcgatactctagaagaagaaacagtgatgctcgcaatgaccccagac
gacttacaggagaaggaagtagcttattgttccacatacacacactgtgagattcatcca
tcaatgattcttggtgtctgtgcctcaattattccttttcctgatcataaccagtccccc
agaaacacataccagtctgccatggggaagcaggccatgggggtttatatcaccaacttt
cacgtgcgcatggacaccttggcccacgttctctattaccctcagaaaccacttgtgact
acacggtctatggagtatctgcgattcagagagctgcctgcaggcattaactcaattgtg
gccattgcatcatacactggatataatcaagaggactctgttatcatgaaccgttcagct
gtagaccgaggctttttcaggtctgttttctatcgatcatacaaagaacaagagtctaag
aaagggtttgatcaagaagaagtttttgagaagcctacacgtgaaacttgccagggtatg
aggcatgccatttatgacaagctggatgatgatggtttgatcgctcctggggttcgtgtg
tcaggagatgatgttattattggcaaaactgtgaccttgcctgaaaatgaagatgagctg
gagggtactaacaggcgctataccaagagagactgtagcaccttcctcaggaccagtgag
acaggcatcgtggaccaggttatggtcactctcaaccaggaaggatacaaattttgtaaa
ataagggtgcgctccgttagaattccacagattggagacaaatttgcaagtcgacatggt
cagaagggtacttgtggtattcagtatagacaagaggatatgcctttcacctgtgaaggc
atcacccctgacatcatcatcaacccccacgccatcccctctcgtatgacgattggtcac
ttgattgagtgtcttcaggggaaggtatcagctaacaagggtgaaattggtgatgccact
ccatttaatgatgctgttaacgtgcagaagatttctaatcttttatctgattacggttac
catctcagaggaaatgaggtcctatacaatggattcactggtcgaaaaatcacgtcacaa
atttttattggccccacgtattaccagcgtctgaagcatatggtggatgataagatccat
tcccgagctcggggacctattcagatccttaatcggcagcccatggaggggagatctcgt
gacggtggcctgcgttttggagaaatggaacgagactgtcagattgcccatggagcagcc
cagtttttaagggaaagactatttgaggcatcagatccttatcaggttcatgtctgcaac
ctgtgtggcataatggcgatcgctaacacccggacccatacgtatgaatgcagaggctgc
cggaataagactcagatctcgctggtgcggatgccgtatgcctgcaagctgctgtttcag
gagctcatgtccatgagtattgcacctcggatgatgagtgtttag
DBGET
integrated database retrieval system
