Sus scrofa (pig): 397014
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Entry
397014 CDS
T01009
Symbol
HTT
Name
(RefSeq) huntingtin
KO
K04533
huntingtin
Organism
ssc
Sus scrofa (pig)
Pathway
ssc05016
Huntington disease
ssc05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
397014 (HTT)
05022 Pathways of neurodegeneration - multiple diseases
397014 (HTT)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
397014 (HTT)
04131 Membrane trafficking [BR:
ssc04131
]
397014 (HTT)
03029 Mitochondrial biogenesis [BR:
ssc03029
]
397014 (HTT)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
397014 (HTT)
Membrane trafficking [BR:
ssc04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
397014 (HTT)
Mitochondrial biogenesis [BR:
ssc03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
397014 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
HEAT_EF3_N
Death_3
Motif
Other DBs
NCBI-GeneID:
397014
NCBI-ProteinID:
NP_999129
Ensembl:
ENSSSCG00000008697
UniProt:
Q9GM99
LinkDB
All DBs
Position
8:1809768..1934002
Genome browser
AA seq
3139 aa
AA seq
DB search
MATLEKLMKAFESLKSFQQQQQQQQQQQQQQQQQQLPPPPPQPPQPPPQTQPPPQPPPPP
PPPPPPPPGPAVAEEPLHRPKKELSATKKDRVNHCLTICENIVAQSLRNSPEFQKLLGIA
MELFLLCSDDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEIKKNGAPRSLRAALW
RFAELAHLVRPQKCRPYLVNLLPCLTRTSKRPEESVQETLAAAVPKIMASFGNFANDNEI
KVLLKAFVANLKSGSPTVRRTAAGAAVSVCQHSRRTRYFYSWLLSVLLGLLVPVEEEHGT
LLILGVLLTLRYLVPLLQQQVKDTSLKGSFGVTRKEMEVSPSTEQLVQVYELTLHYTQHQ
DHNVVTGALELLQQLLRTPPPELLQALTSPGGIAQLTANNDEPRCRSRSGSIVELIAGGG
SSCSPVLSRKQKGKVLLGDAAALEDEPASRSEGSSPALTASVTGELGGELAPSSGVSTPG
SASSAADSVGHDIITEQPRSQHTLQPDSVDLSGCDLSSAATDGDEEDILSHSSSQMSAVP
SDPAMDLNDGTQASSPVSDSSQTTTEGPDSAVTPSDSSEIVLDGADGQYSGLRLGQPQDA
DADEDAAGLLPHGGPDAFRSSPTALQQSHVLKSLGHSRQPSDSSVDKFVSRDEAAEAGEP
ENKPCRIKGDIGQSTDEDSAPLVHCVRLLSASFLLTGKRNALVPDRDVRVSVKALALSCV
GAAVALHPESFFSKLYKAPLDSVEYPDEQYVSDILSYIHHGDPQVRGATAILCGTLVSSI
LSRSRFHVGDWMGAVRALTGNAFSLVDCIPLLQKTLKDESSVTCKLACTAVRLCVAALCG
SSYSQWGLQLITDLLTLRSSSYWLVRTELLETVAEIDFRLVSFLEAKAENLHRGAHHYTG
LLRLQERVLNNVVIYLLGDEDPRVRHVAAASLVRLVPKLFYKCDQGQADPVVAVARDQSS
VYLKLLMHETQPPSHFSVSTVTRTYRGYNLLPSVTDVTLENNLSRVTAAVSHELITSTTR
ALTFGCCEALCLLSTAFPVCVWSLGWHCGVPPLGAADESRKSCTVGMATTVLTLLSSAWF
PLDLSAHQDALILAGNLLAASAPRSLRSSWTLEEEASPAATRQEEVWPALGDRSLVPMVE
QLFSHLLKVLNICAHVLDDVAPGPAVKAALPSLANPPSLSPIRRKGKEKEPGEQASVPVS
PKKGGEASPAARQSDTSGPVAANKSSSLGSFCHLPSYLKLHDVLKATHANYKVTLDLQSG
TEKFRGLLCSALDVLSQVLEVATLQDIGKCVEEILGYLKSCFSREPTMATVCVQQLLKTL
FGTNLASQFDGLASTPSKCQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALADASLRNLV
QAEQDHDASGWFDVLQKVSTQLKTNLTSVTKNRADKTALHNHIRLFEPLVIKALKQYTTT
TSVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFF
FLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKAD
AGKELETQKEVVVSMLLRLVQYHQVLEMLILVLQQCHKESEDKWKRLSRQVADVILPMLA
RQQMHIDSHDALGVLNTLFEVLAPSSLRPVDMLLRTMFLTPDSLAAVSTVQLWVSGILAI
LRVLISQSTEDIVLSRIQELSFSPSLISCPMIIRLRGGNSDSAPEEHSEGRQGKNLPEET
FSRFLLQLVGILLEDIVTKRLRVEVSEQQHTFYCQELGTLLMCLIHIFKSGMFRRVTAAA
SRLLTDGADGAFFGLERLNAWVRAMVPTHPALVLLWCQILLLVSHTDYRWWAEVQQTPRR
RSLSSTKSLGPQMSGEDEDSDAASRLGMCSREIVRRGALILFCDYVCQNLHDSEHLTWLI
VNHIQDLIHLSHEPPVQDFISAVHRNAAASGLFIQAIQSRCENLSAPTTLKKTLQCLEGI
HLSQSGAVLTLYVDKLLRTPFRVLARMVDTLACRRVEMLLAANLQSSMAQLPVEELTRIQ
EYLQSSGLAQRHQRLSSLLDRLRLATAPGSRGPAPRVSSHPLDGDGPLALETVSPDKDWY
LRLVKSQCWTRSDSALLEGAELVSRIPPGDMGAFLMNPEFNLSLLAPCLGLGMREISAGQ
KSPLFEAARAATLDRVTSVVQQLPAVHQVFQPFLPTEPAAYWSKLDDLFGDAVLYRSLTT
LARALAQYLLVLSKLPGPLQLPPEKEADTVRFVVMTLEALAWHLVHEQIPLSLDLQAGLD
CCCLALQLPGLWSALSSPEMVTHACSLILCVRFILEAIVVQPGDQLLSPERKADTPKAAG
EDEVDSNTQSPPYLGAACRMVAEMVASLPSVLALGRERSSRTPAFLAPVLRNVIVSLARL
PLVNSYTRVPPLVWKLGWSPRPGGDFGTAFPEIPVEFLQEKEVFREFIFRINTLGWTSRT
QFEETWATLLGVLVTQPLVMEQEENPPEEDTERTQIHVLAVQAITSLVLSAMTVPVAGNP
AVSCLEQQPRNKPLKALDTRFGRKLSVIRGVVEQEVQAMVSKRENVATHHLYQAWDPVPS
LSPATTGALISHDRLLLQVNPERELGDTGYQLGQVSIHSVWLGNSITPLREEEWDEEEEE
EADVPVPSPPTSPLNSRKHRAGVDIHSCSQFLLELYSRWILPSSAARRTPVILISEVVRS
LLVVSDLFTERSQFEMMYLTLTELRRAHPPEDEILLQYLVPATCKAAAVLGMDKAVAEPV
SRLLESTLRSSHLPSRIGALHGALYVLECDLLDDTAKQLIPAISDYLLSNLRGVAHCVNV
HSQQHVLVMCATAFYLIENYPLDVGPEFSASVIQMCGVMLSGSEESTPSIVYHCVLRGLE
RLLLSEQLSRLDAESLVKLSVDRVNAHSPHRAMAALGLMLTCMYTGKEKISPGRSSDPSP
AAPDSESVIVAMERVSVLFDRIRKGFPCEARVVARILPQFLDDFFPPQDVMNKVIGEFLS
NQQPYPQFMATVVYQVFQTLHSTGQSSMVRDWVMLSLSNFTQRTPVAMAVWSLSCFFVSA
STSPWVSAILPHVVSRMGKLEQVDVNLFCLVATDFYRHQIEEELDRRAFQSVFEVVAVPG
NPYHRLLTCLQDVHRVAAC
NT seq
9420 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccctggaaaagctgatgaaagctttcgagtctctcaagtccttccagcagcag
cagcagcaacagcagcagcagcagcagcagcagcagcaacagcagctgccgccaccgccg
cctcagcctcctcagccgccaccgcagacgcagccgccgcctcagccgccgccgcccccg
cccccgccgccgccgccgccgcccggcccggcagtggccgaggagccgctgcaccgacca
aagaaggagctctcagccaccaagaaagatcgtgtgaatcattgtctgacaatatgtgaa
aacatagtggcacagtctctcagaaattcaccagaatttcagaaactgctgggcatcgct
atggaacttttcctgctgtgcagtgatgatgcagagtcagatgtcaggatggtggctgac
gaatgcctcaacaaagtcatcaaggctttgatggattccaaccttccgaggttacagcta
gaactttataaggaaattaaaaagaacggtgctcctcggagcctccgtgctgccctgtgg
aggtttgctgagctggctcacctggtccggcctcagaagtgcaggccgtacttggtgaac
ctcttgccctgcctgacgcgcacaagcaagaggcccgaggagtctgttcaggagaccttg
gctgcagccgtcccgaaaatcatggcgtcctttggcaatttcgcaaacgacaatgagatt
aaggttctgttgaaggccttcgtagcgaacctgaagtccggctcccccacggtccggcgc
acggcggcgggcgcggcggtgagcgtgtgccagcactcccggcggacgcgctacttctac
agctggctgctcagcgtgctcttaggtctgctcgtgcctgtggaggaggaacacggcacc
ctcctgattctcggggtgctgctcaccctgaggtatctggtgcccctgctgcagcagcag
gtcaaggacacgagcctgaaaggcagcttcggggtgacccggaaggaaatggaggtctct
ccctcgacggaacagcttgtccaggtttacgagttgaccttgcattacactcagcaccaa
gaccacaacgttgtgacgggggccttggagctcctgcagcagctgctcaggacgcctccc
ccggagctcctgcaggcgctgacctcgccgggcggcatcgcgcagctcaccgccaacaac
gacgagcccaggtgccgaagtcgcagcgggagcatcgtggagctcatagctggagggggt
tcttcatgcagccctgtcctttcaagaaaacaaaaagggaaggtgctcttgggagacgca
gcggccttggaggatgagcctgcgtcgcggtcggagggcagcagccccgccctcacagcc
tcggtcacgggtgagctgggtggtgagctggccccctcctccggtgtctccactcctggc
tctgccagctccgctgccgactctgtgggtcacgacatcatcacagaacagccccggtct
cagcacacgctgcagccggactcggtggatctgagcggctgtgacttgagcagcgctgcc
accgatggggacgaggaggacatcttgagccacagctccagccagatgagtgccgtcccg
tcggaccctgccatggacttgaacgatgggacccaggcctcctcacccgtcagcgacagc
tcccagaccaccaccgagggccctgactcggctgtgaccccttcagacagctctgaaatt
gtgttggatggtgcagacggccagtactctgggctgcggttgggacagccccaggacgcg
gacgcggacgaggacgccgcagggctccttccccacggaggcccggatgctttcagaagc
tcccccaccgcccttcaacagtcacatgtgttgaaaagcctgggccacagcaggcagccc
tccgacagcagtgtagataaatttgtctcgagagacgaagctgctgaggcaggagagcca
gaaaacaagccttgccgcatcaaaggtgacataggccagtccaccgacgaggattctgct
cctctcgtccactgtgtccgccttttatctgcttcatttttgctgacggggaaaagaaac
gccttggttccagaccgggatgtgagggtcagtgtgaaggcgctggcgctcagctgtgtg
ggcgccgccgtggccctgcatcctgagtccttcttcagcaagctttataaggcgcccctg
gacagcgtggagtacccggacgagcagtacgtgtcggacatcctgagctacatccaccac
ggcgacccgcaggtccgaggcgccacagccatcctctgcggaaccctggtctcctccatc
ctcagcaggtcccgcttccacgtgggggactggatgggcgccgtccgggctctgacagga
aatgcattttctctggtggactgcattccgctgctgcaaaagacgttgaaggatgaatcc
tccgttacgtgcaagttggcgtgcacagccgtgaggctctgcgtggcggctctctgcggc
agcagctacagccagtgggggctgcagctcatcaccgacctgctgaccctgaggagcagc
tcctactggctggtgcggaccgagctcctggagaccgtggcagagattgacttcaggttg
gtgagctttttggaggcaaaagcagaaaacctacacagaggggcccatcactacacaggg
ctgttaagactgcaagaacgagtgctcaataatgttgtcatctacctgctaggggacgag
gaccccagggtgcgacatgttgctgcagcttcgttagtgaggctcgtcccaaagctgttt
tataaatgtgaccaaggccaggctgacccagtggtggccgtggcgagagatcaaagcagt
gtttacctgaagctcctcatgcacgagacgcagcctccgtcgcacttctccgtcagcacc
gtcaccagaacatacagaggctataacctactaccgagcgtcaccgacgtcactctggaa
aataacctttcgcgagttactgcagcagtttctcatgaactcatcacgtcaaccacccga
gcactcacatttggatgctgtgaagctttgtgtcttctttcaactgccttccctgtttgc
gtctggagtttaggctggcactgtggagtgccgcctctgggcgccgcggatgagtccagg
aagagctgtactgtcggcatggccaccacggtcctgacgctgctctcctcagcttggttc
ccgctggacctctcagcccatcaagacgctttgattttagccggaaatttgcttgcagcc
agtgcccccaggtccctgaggagttcctggaccttggaggaagaggccagcccagcggcc
accaggcaggaggaggtctggccggctctgggcgaccgctcgctggtgcccatggtggag
cagctcttctcccacctgctcaaggtgctcaacatctgcgcgcacgtcctggacgacgtg
gctcccggaccagcagtcaaggcagccttgccgtctctagcaaaccccccttctctgagc
ccgatccgacgaaagggaaaagagaaggaaccgggagagcaggcgtctgtgcccgtgagt
cccaagaaaggcggtgaggccagtccagccgctcgacagtcggatacctcagggcctgtc
gctgcaaacaagtcctcgtcactgggcagcttctgtcacctcccttcttacctcaaactg
cacgatgttctgaaagctactcacgcaaactataaggtcaccttggatctccagagcggc
actgagaagttccggggccttctatgctctgccttggatgtcctctcccaggtgctggag
gtggcgacgctgcaggacatcgggaagtgtgttgaggagatcctgggctacctgaaatcc
tgcttcagccgagaaccaacaatggcgactgtgtgcgtgcagcagttgttgaagacgctc
ttcgggacaaacttggcctcccagttcgacggcttggcctccacccccagcaagtgtcag
ggccgcgctcagcgcctgggctcctccagcgtgaggccgggcttgtaccactactgcttc
atggctccgtacacccacttcacccaggccctcgccgacgccagcctgaggaacttggtg
caggcggagcaggaccacgacgcctcagggtggtttgacgtactccagaaagtgtccacc
caactgaagacaaacctcaccagtgtcaccaagaaccgtgcggacaagactgctctgcat
aaccacatccgcctcttcgagcctctcgttataaaagctttaaaacagtacacgaccacc
acctccgtgcagttacagaagcaggttttggatttgctggcgcagctggttcagctacgg
gttaattactgtcttctggattctgatcaggtgtttattggatttgtgctgaagcagttt
gaatacattgaagtgggccagttcagggaatcagaggcaattattccaaacatctttttc
ttcctggtactgctgtcttatgaacgctatcattcaaaacagatcattggaattcctaaa
atcatccagctctgtgacggcatcatggccagtggcaggaaggctgtgacacacgccatt
ccggctctgcagcccatcgtccacgacctcttcgttttaagaggaaccaataaggctgat
gcaggaaaagagctcgagacccagaaggaggtggtggtgtccatgctgctgaggctcgtc
cagtaccatcaggtgctggagatgctcatcctggtcctgcagcagtgccacaaggagagc
gaggacaagtggaagcggctgtcgcggcaggtggccgacgtcatcctcccgatgctggcc
agacagcagatgcacatcgactcgcacgacgccctcggggtgttgaacacgctgtttgag
gtcctggccccctcctccctccgccccgtggacatgctgctgcggactatgtttctcact
ccagactcgctggccgctgtgagcaccgtccagctctgggtgtcgggcatcctggccatc
ctgagggtgctcatctcccagtcaacggaggacatcgtgctgtcccggattcaggagctc
tccttctccccgagcttgatctcctgcccgatgatcatccggctaagaggcgggaacagt
gactcagccccggaggagcacagcgaggggagacaggggaagaatctgccggaagaaacc
ttttcaaggtttctgctccagttggtgggcatcctcctggaagacatcgtcaccaagcgg
ctgcgggtggaagtgagcgagcagcagcataccttctattgccaggagctgggcacgctg
ctcatgtgcctgatccacatcttcaagtctgggatgttccggagagtcacggcagctgcc
tccagactgctcaccgacggcgcggacggcgccttcttcggcctggagcgcctgaacgcc
tgggtgcgcgccatggtccccacccacccggccctcgtgctgctctggtgtcagatcctg
ctgctcgtcagccacaccgactaccgctggtgggcagaggtgcagcagacccccagaaga
cgcagtctgtccagcaccaagtcgcttggtccccagatgtctggagaggacgaggactcc
gacgcggcttccagactgggaatgtgcagtagagaaatcgtacgaagaggggccctgatt
ctcttctgtgattacgtctgccagaacctgcatgactcggagcacttgacctggctcatc
gtgaaccacattcaggatctcatccacctgtcgcacgagccgccggtgcaggacttcatc
agcgccgtgcaccgcaacgccgcagccagcggccttttcatccaggccatccagtcccgc
tgtgagaacctctccgcccctaccacgctgaagaaaaccctgcagtgcctggaagggatc
cacctgagccagtcgggcgccgtgctgacgctgtacgtggacaagcttctgcgcacgccg
ttccgggtgctggcccgcatggtcgacaccctggcttgccgccgggtggaaatgcttttg
gccgcaaacttacagagcagcatggcccagttgcccgtggaggaactgacccgaatccag
gaataccttcagagcagcggcttagctcagagacaccaaaggctctcctccctgctggac
aggctgcgtctcgccaccgccccaggctcgcgtggtcccgctcctcgggtctcgtcccac
ccgctggacggggacgggcccctggcactggagacagtgagtcctgacaaagactggtac
ctccgtctggtgaaatcccagtgctggactcgctcagactccgcgctgctggaaggggcg
gagctggtgagccggatcccacccggcgacatgggcgccttcctgatgaacccggagttc
aacttgagcctgttagccccgtgcttgggcctgggcatgcgtgagatctctgccggccag
aagagtcccctgtttgaggcggcccgcgcggccaccctggaccgcgtgacgagcgtggtc
cagcagcttcccgctgtccatcaggttttccagccattcctgcccacagagcctgccgcc
tactggagcaagttggacgatctctttggggacgctgtgctgtatcggtccctgaccacc
ttggcccgggcgctggcccagtacctgctggtgctctccaaactgcccggccccctgcag
cttccccccgagaaggaggcggacaccgtgaggttcgtggtcatgactctcgaggccctg
gcgtggcatctggtccacgagcagatcccgctgagcctggacctgcaggccggcctggac
tgctgctgcctggccctgcagctgcccggcctctggagcgcgctctcctccccagagatg
gtgacccacgcctgctccctcatcctctgtgtccggttcatcttggaagccattgtcgtg
cagcctggggaccagcttcttagtccagagagaaaggcagacacgccaaaggctgccggc
gaggatgaagtggattcgaacacacagagccctccgtatcttggcgcggcctgcaggatg
gtggcggagatggtggcgagcctgccctcggtgttggcgctgggccgtgagcggagcagc
cgcacgccggccttcctcgcgcccgtgctcaggaacgtcatcgtcagcctggcccgcctg
cccctggtcaacagctacacgcgcgtcccacccctggtgtggaaactcgggtggtcgccc
agaccaggaggggactttggcacggcgttccctgagatccccgtggagttcctccaggag
aaggaagtcttcagggagttcatcttccgcatcaacacgctaggctggaccagccgtacc
cagtttgaggaaacgtgggccaccctgcttggtgtcctggtgactcagcccctcgtgatg
gagcaggaggagaacccaccagaggaggacacagagcggacgcagatccacgtcctggcc
gtgcaggccatcacctccctggtgctgagtgcgatgaccgtgcctgtggccggcaacccg
gccgtgagctgcttggagcagcagccccggaacaagccgctgaaagccctcgacaccagg
tttgggaggaagttgagcgtcatccggggggtcgtggagcaggaagtgcaagcgatggtt
tccaagcgcgagaacgtcgccacccaccacctgtaccaagcctgggaccccgtcccgtct
ctgtctcccgccacgacaggtgccctcatcagccatgacagactcctgctgcaggtcaac
cccgagcgggagctgggggacaccggctaccagctgggccaggtgtccatccactccgtg
tggctggggaacagcatcacgcccctgcgggaggaggagtgggatgaggaggaggaggag
gaggcggacgtccccgtgccatccccgcccacgtcgccgctcaactccaggaagcaccgc
gctggcgttgacatccactcctgctcgcagtttctgctcgagctctacagtcgctggatc
ctgccgtccagcgcggccaggaggacccccgtcatcctcatcagcgaagtggtccgatcc
cttctggtggtctctgacttgttcacggagcgcagccagtttgagatgatgtatctgacg
ctgacggagctgcggcgggcgcaccccccagaggacgagattctcctccagtacctggtg
cccgccacctgcaaggcggccgccgtcctcggcatggacaaggccgtggcagagccggtg
agccggctgctggagagcacgctcaggagcagccacctgcccagcaggatcggagccctg
cacggcgccctctacgtgctggagtgcgacctcctggacgacacggccaagcagctcatc
ccggccatcagcgactatctcctctccaacctccgaggcgtggcccactgtgtgaacgtg
cacagccagcagcacgtgctggtgatgtgcgccacggccttctacctgatcgagaactac
cctctggacgtcgggcccgagttctctgcgtccgtcatacagatgtgtggcgtgatgctg
tccggcagcgaggagtccaccccgtccatcgtctaccactgcgtcctgaggggcctggag
cgcctcctgctctccgagcagctctcccggctggacgcggagtccctggtcaagctgagc
gtggacagagtgaacgcgcacagcccgcaccgcgccatggcggccctgggcctgatgctc
acctgcatgtacacgggaaaggagaagatcagcccaggcagaagctccgaccccagccct
gccgcccccgacagcgagtctgtgattgtggccatggagcgtgtgtctgttctcttcgac
aggatcagaaaggggtttccctgtgaagccagagtggtggccaggatcctgccccagttc
ctggatgacttcttcccgccccaggacgtcatgaacaaggtcattggggagtttctgtcc
aaccagcagccgtacccgcagttcatggccactgtcgtgtaccaggtgttccagacgctg
cacagcaccggacagtcgtccatggtccgggactgggtcatgctgtccctctccaacttc
acccagaggaccccagtcgccatggccgtgtggagcctctcctgcttcttcgtcagcgcc
tccaccagcccgtgggtctcggccatcctcccgcacgtcgtcagcaggatgggcaagctg
gaacaggtggacgtgaacctcttctgcctggtggccacggacttctacagacaccagata
gaggaggagcttgaccgcagggccttccagtccgtgttcgaggtggtcgccgtgccagga
aacccctatcaccgactgctgacatgtttgcaggatgtccacagggtggctgcatgctga
DBGET
integrated database retrieval system
