Sus scrofa (pig): 397323
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Entry
397323 CDS
T01009
Symbol
COL2A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04151
PI3K-Akt signaling pathway
ssc04510
Focal adhesion
ssc04512
ECM-receptor interaction
ssc04518
Integrin signaling
ssc04974
Protein digestion and absorption
ssc05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
397323 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
397323 (COL2A1)
04518 Integrin signaling
397323 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
397323 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
397323 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
397323 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssc00536
]
397323 (COL2A1)
Glycosaminoglycan binding proteins [BR:
ssc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
397323 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
397323
NCBI-ProteinID:
XP_020948270
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All DBs
Position
5:complement(78350131..78380893)
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AA seq
1487 aa
AA seq
DB search
MIRLGAPQTLVLLTLLVAAVLRCHGQDVQKAGSCVQDGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDLKDCLSPETPFGECCPICSTDLATASGQLGPKGQKGEPGDIKDIVGPKG
PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG
PRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGNPGSPGPAGASGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQG
APGPAGEEGKRGARGEPGGAGPAGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG
PSGFQGLPGPPGAPGEGGKPGDQGVPGEAGAPGXVGPRGERGFPGERGSPGSQGLQGPRG
LPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGPPGEKGEPG
EDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG
PVGPPGLTGPSGEPGREGSPGADGPPGRDGAAGVKGDRGETGAAGAPGAPGPPGSPGPAG
PTGKQGDRGEAGAQGPMGPAGPAGARGMPGPQGPRGDKGEAGEAGERGLKGHRGFTGLQG
LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG
PPGTPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEAAGNLRQHDAEVDATLK
SLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG
ETCVYPSPASVPKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRL
LSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDGCTK
HTGKWGQTMIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccagacgctggtgctgctgacgctgctcgtcgccgctgtc
cttcggtgtcacggccaggatgtccagaaggctggcagctgcgtgcaggatgggcagagg
tataatgataaggatgtgtggaagcccgagccctgccggatctgtgtctgtgacactggg
actgtcctctgcgacgacataatctgtgaagacctgaaagactgcctcagccccgagacc
cccttcggagagtgctgccccatctgctccaccgacctcgccactgccagtgggcaactg
ggaccaaagggacagaaaggagaacctggagacatcaaagatattgtaggacccaaagga
cctcctgggcctcagggacctgcaggtgaacaaggacccagaggtgatcgtggtgacaaa
ggtgaaaaaggtgctcctggacctcgtggcagagatggagagcctgggacccctggaaat
cctgggccccctggtcctcctggtccccctggtccccctggccttggtggaaacttcgct
gcccagatggctggaggattcgatgagaaggctggtggcgcccagatgggagtcatgcag
ggaccaatgggccccatgggacctcggggacctccaggccctgctggtgctcccggacct
caaggatttcaaggcaaccctggagagcctggagagcctggcgtgtcgggtcccatgggt
ccccgaggtcctcctggcccccctggaaaacctggtgatgatggtgaagctggaaagcct
ggaaaatctggcgagagaggccctcctggccctcagggtgctcgcggcttcccaggaacc
ccaggccttcctggtgtcaaaggtcacagaggttacccaggtctagatggtgctaaggga
gaagctggtgctccaggcgtgaagggtgagagtggttccccaggagagaatggttctcca
ggcccaatgggtccccgcggcctgcctggtgagagaggacggactggccctgctggcgct
gcgggtgcccggggcaacgacggtcaaccaggccctgcagggcctccgggtcccgtgggt
cctgctggcggtcctggcttccctggtgctcccggtgccaagggtgaagctggccccact
ggtgctcgaggtcctgaaggcgcccaaggtcctcgaggtgaacctggaaatcctgggtcc
cctgggccagctggtgcctctggtaaccctggaactgatggaattcctggagctaaagga
tctgctggtgctcctggcattgctggtgctcctggcttccccgggccccgtggtccaccc
ggccctcaaggtgcaactggtcctctgggcccgaaaggtcaaacgggtgagcctggaatt
gctggcttcaaaggcgaacaaggccccaagggagaaccgggccctgctggtccccaagga
gcccccggtcctgctggtgaagaaggcaaaagaggtgcccgtggagagcctggtggtgct
gggcctgccggtccccctggagaaagaggtgctcctggcaaccgtggtttccctggtcaa
gatggtctagcaggtcccaagggagcccctggagagcgaggtcccagtggccttgctggt
cccaagggagccaacggtgaccctggccgtcccggagagcctggccttcctggagcccgg
ggtctcacgggtcgccctggtgatgctggtcctcaaggcaaagttggtccttccggagct
cctggtgaagatggtcgccctggacctccaggtccccaaggggctcgtgggcagcctggt
gtcatgggtttccctggccccaaaggtgccaatggtgagcctggcaaagctggtgagaag
ggactgcctggtgctcctggcctgagaggtcttcctggcaaagatggcgagacaggtgct
gcaggtcctcctggacccgccggacctgctggtgaacgaggcgagcagggtgctcctggg
ccatctggcttccagggacttcctggccctcccggtgccccaggtgaaggtgggaaacca
ggtgatcagggcgttcctggtgaagctggagctcctggcntcgtgggtcccaggggtgaa
cgaggtttcccaggggagcgtggctctcccggatcccagggtctccaggggccccgcggc
ctccccggaactcctggcacggatggtcccaaaggcgcatctggcccagctggcccccct
ggggctcagggccctccaggtctgcaggggatgcccggtgagaggggagctgctggtatt
gccgggcccaagggagaccggggcgatgttggtgagaaaggccccgagggagcccccggg
aaagacggcggaagaggtctgactggccccatcggcccccctggcccagcgggtgctaac
ggtgagaagggagaagttggacctcctggtcctgcaggaactgctggtgctcgtggcgcc
ccgggtgaacgtggagagactggaccccccggacctgctggattcgctggtcctcccggt
gctgacggccagcccggtgccaaaggcgagcaaggagaggccggccagaaaggtgacgct
ggtgccccaggtcctcaggggccctctggagctcctgggcctcagggtcccactggtgtg
actggtcctaaaggagcccgaggtgctcaaggccccccgggagccaccggattccccgga
gctgctggccgcgtcggacccccaggctccaatggcaaccctggaccccctggtccccct
ggtccttctggaaaagatggtcccaaaggcgctcgaggagacagtggcccccctggccga
gctggtgaccctggcctccaaggtcctgctggaccccctggcgagaagggagagcctgga
gaggatggtccctctggtcctgatggtcctccaggtccccagggtctggctggtcaacgg
ggcatcgtcggtctgcctggacagcgtggtgagcgaggattccccggcctgcctggccca
tcgggcgagcctggcaagcagggagctcccggagcatctggagaccgaggtccccctggt
cctgtcggtcctcccggcctgactggtccttctggtgaacctggacgtgagggaagcccc
ggtgctgatggcccccctggcagagatggtgcagctggagtcaagggtgatcgtggtgag
actggtgctgcgggcgctcctggagcccctgggccccctggctctcctggccccgccggc
cccactggcaagcagggagaccgaggagaagctggagcacaaggccccatgggacctgca
ggaccagctggagcccgaggaatgccaggccctcaaggcccccgaggtgacaaaggagaa
gctggagaggctggcgagaggggactgaagggacaccgtggcttcactggtctgcagggt
ctgcccggcccccctggtccttctggagaccaaggtgcttctggtcctgctggtccttct
ggccctagaggtcctcctggccccgtcggtccttcaggcaaagatggtgctaatggaatc
cctggccccattggacctcctggtccccgtggacgttctggtgaaactggccccgctggt
cctcctggaactcctggcccccctggccccccaggtcccccgggtcctggcatcgacatg
tccgcctttgctggcctaggccagagagagaagggtcccgaccccctgcagtacatgcgg
gccgacgaggcggccggcaacctgaggcagcacgatgctgaggtggatgccacgctcaag
tccctcaacaaccagattgagagcatccgcagtcccgagggctcccgcaagaaccctgct
cgcacctgccgggacctgaaactctgccaccccgagtggaagagcggagactactggatc
gaccccaaccagggatgcactttggacgccatgaaggttttctgcaacatggagactggt
gagacctgcgtctaccccagcccagccagcgttcccaagaagaactggtggagcagcaag
agcaaggacaagaaacacatctggtttggagaaaccatcaatggcggcttccatttcagc
tatggagatgacaacctggctcctaacactgccaacgtccagatgaccttcctgcgcctg
ctgtccactgagggctcccagaacatcacctaccactgcaagaacagcattgcctacctg
gacgaagctgctggcaacctcaagaaagccctgctcatccagggctccaacgacgtggag
atccgggctgagggcaacagcaggttcacgtatactgttctgaaggatggctgcacgaaa
cacaccggtaagtggggccagactatgattgagtaccggtcacagaagacctctcgcctc
cccatcattgacatcgcgcctatggacataggagggcccgagcaggaattcggtgtggac
atagggcctgtctgcttcttgtaa
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integrated database retrieval system
