Sus scrofa (pig): 397506
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Entry
397506 CDS
T01009
Symbol
RAG1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04068
FoxO signaling pathway
ssc05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
397506 (RAG1)
09160 Human Diseases
09163 Immune disease
05340 Primary immunodeficiency
397506 (RAG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ssc04121
]
397506 (RAG1)
Enzymes [BR:
ssc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
397506 (RAG1)
Ubiquitin system [BR:
ssc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
397506 (RAG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAG1
RAG1_imp_bd
zf-RAG1
zf-C3HC4_2
zf-C3HC4
zf-RING_6
zf-RING_10
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
397506
NCBI-ProteinID:
NP_001116656
Ensembl:
ENSSSCG00000026145
Vega:
OTTSUSG00000003503
UniProt:
Q867B5
A0A481A9F8
LinkDB
All DBs
Position
2:complement(24565447..24573853)
Genome browser
AA seq
1043 aa
AA seq
DB search
MAVSLPPTLGLSSAPDEIQHPHIKFSEWKFKLFRVRSFEKAPEKAQTEKQDSSEGKPSLE
QSPAVLDKPGGQKSALPQPAFKPHPKFLKESHEDGKARDKAIHQANLRRLCRICGNSFNT
TGHKRRYPVHGPVDGKTQVLLRKKEKRATSWPDLIAKVFRIDVKADVDSIHPTEFCHNCW
SFMHRKFSSTPCEVYSPRNAAMEWHPHTLNCDICHIARRGLKRKSQQPNMQLSKKLKTVI
DRARQARQRKRRAQARISSKELMKKIANCGQIHLSPKLLAVDFPAHFVKSISCQICEHIL
ADPVETSCKHVFCRICILRCLKVMGSSCPSCHYPCFPTDLESPVKSFLSILNTLMVKCPA
KECNEEISLEKYNHHISSHKESKETFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKA
FADKEEGGDVKSVCLTLFLLVLRARNEHRQADELEAIMRGQGSGLQPAVCLAIRVNTFLS
CSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHPFEWQPPLKNVSSSTDVGIIDG
LSGLSSSVDDYPVDTIAKRFRYDSALVSALMDMEEDILEGMRAQDLDDYLNGPFTVVVKE
SCDGMGDVSEKHGSGPVVPEKAVRFSFTVMKITIAHGSQNVKVFEEAKPNSELCCKPLCL
MLADESDHETLTAILSPLIAEREAMKSSQLMLEMGGILRTFKFIFRGTGYDEKLVREVEG
LEASGSVYICTLCDATRLEASQNLVFHSITRSHAENLERYEVWRSNPYHETVDELRDRVK
GVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEAYKNPHASKEERKRWQATLDKHL
RKKMNLKPIMRMNGNFARKLMTKETVEAVCELIPSEERHEALRELMDLYLKMKPVWRSSC
PAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWA
SEGNESGNKLFRRFRKMNARQSKYYEMEDVLKHHWLYTSKYLQKFMNAHKAFKNSGFTIN
LQRSSGDTLDLENSPESQDLMEF
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggctgtctctttgccacccactctgggactcagttccgccccagatgaaatccagcac
ccccacattaaattttcagaatggaaatttaagctattcagggtgagatcctttgaaaag
gcacctgaaaaggctcaaacggaaaagcaggattcctccgaggggaaaccctcgctggag
caatctccagcagtcctggacaagcctggtggtcagaagtcagccctgcctcaaccagca
ttcaagccccatccaaagtttttaaaggaatcccacgaagatgggaaagcaagagacaaa
gccatccaccaagccaacctgagacgtctctgccgcatctgtgggaattctttcaacacc
actgggcacaagagaaggtatccagtccacgggcctgtggatggtaaaacccaagtcctt
ttacggaagaaggaaaagagggccacgtcctggccagacctcattgccaaagttttccgg
atcgatgtgaaggcagatgttgactcgatccaccccactgagttctgccataactgctgg
agcttcatgcacaggaagtttagcagcaccccatgtgaggtttactccccaaggaatgca
gccatggagtggcacccccacaccctaaactgtgacatctgccacattgcacgtcgggga
ctcaagaggaagagtcagcagccaaacatgcagctcagcaaaaaactcaaaactgtgatt
gaccgagcgagacaagcccgtcagcgcaagaggagagctcaggccaggatcagcagcaag
gaactgatgaagaagatcgccaactgcggtcagatacatcttagccccaagctcctggca
gtggacttcccggcgcactttgtgaaatctatctcctgccagatttgtgaacacatcctg
gccgacccggtggagaccagctgcaagcatgtgttttgcaggatctgcattctcaggtgc
ctcaaagtcatgggcagcagttgtccctcttgccactatccctgttttcctactgacctg
gagagtccagtgaagtcttttctgagcatcttgaataccctgatggtgaaatgcccagca
aaggagtgcaacgaggagatcagcttggaaaaatataatcaccatatctcaagccacaag
gagtcgaaggagacatttgtgcatattaataaagggggccggccccgccagcatctcctg
tccctgacgcggagggctcagaaacaccgtctgagggagctcaagctgcaagtcaaggcc
ttcgccgacaaagaagaaggtggcgatgtgaagtcagtgtgcctgaccttgttcctgcta
gtgctgagggcgaggaatgagcacagacaagctgacgagctggaggccatcatgcgaggc
cagggctccggcctgcagcctgctgtttgcttggccatccgcgtcaacaccttcctcagc
tgcagccagtaccacaagatgtacaggactgtgaaggccatcacgggcaggcagattttc
cagcctttgcatgcccttcggaatgcggagaaggtccttctgcccggctaccaccccttc
gagtggcagccacctctgaagaatgtgtcttccagcacagacgtgggcattattgatggg
ctgtctggactctcctcctctgtggacgattacccagtggacaccattgccaagcgcttc
cgctatgactcggctctggtgtccgctctcatggacatggaagaagacatcctggagggt
atgagagcccaagaccttgacgactacctgaatggccccttcactgtggtggtgaaggag
tcttgtgatgggatgggagacgtgagtgagaagcacggcagtgggccggtcgtgccggaa
aaggccgttcggttttccttcacagtcatgaaaatcaccatcgcacacgggtcacagaac
gtgaaggtgtttgaggaagccaagcctaactctgaactatgctgcaagcccttgtgcctc
atgctggccgacgaatccgaccatgagaccctgacggccatcctgagccctctcattgcc
gagagggaggccatgaagagcagccagctaatgctggagatgggaggcatcctccggact
ttcaagttcatcttcaggggcaccggatatgatgagaaactggtccgggaagtggaaggc
cttgaggcttctggctctgtctacatctgtaccctctgtgatgccacccgcctggaagcc
tctcaaaatctggtcttccactccataaccagaagccacgcggagaatttggagcgctat
gaggtctggcgttccaacccataccatgagacggtggatgaacttcgggaccgggtgaaa
ggggtctcggccaaacccttcattgagacggtgccttccatagatgccctccactgtgac
attggcaatgcagccgagttttacaagattttccagctcgagataggggaggcgtataag
aacccccatgcctccaaggaggaaaggaagagatggcaggcgaccttggacaagcacctc
cgcaagaagatgaatctgaagcccatcatgagaatgaatggcaactttgccaggaagctc
atgaccaaagagactgtggaagcagtctgtgagttaattccctccgaggagaggcatgaa
gctctgagggaactgatggacctttacctgaagatgaagcccgtctggcgatcatcatgc
cctgctaaagagtgcccggaatccctctgccagtatagtttcaattcacagcgttttgct
gagctcctctccaccaagttcaagtacagatatgagggcaaaatcaccaattattttcac
aagacactggcccacgtcccggaaattatcgagagggacggctccattggggcatgggct
agcgagggaaatgagtctgggaacaagctgttcaggcgcttccgaaaaatgaatgccagg
cagtccaagtactatgaaatggaagatgttttgaaacatcactggttgtacacctccaaa
tacctgcagaagtttatgaatgctcataaagcatttaaaaactcagggtttaccataaac
ttgcagagaagctcaggggacacattagacctagagaactctccagaatctcaagatttg
atggaattttaa
DBGET
integrated database retrieval system
