Sus scrofa (pig): 448813
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Entry
448813 CDS
T01009
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03013
Nucleocytoplasmic transport
ssc03015
mRNA surveillance pathway
ssc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
448813 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
448813 (DDX39B)
03015 mRNA surveillance pathway
448813 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
448813 (DDX39B)
03041 Spliceosome [BR:
ssc03041
]
448813 (DDX39B)
Enzymes [BR:
ssc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
448813 (DDX39B)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
448813 (DDX39B)
Spliceosome [BR:
ssc03041
]
Complex C
Other components
EJC/TREX
448813 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
448813 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
448813
NCBI-ProteinID:
NP_001005157
Ensembl:
ENSSSCG00000001400
Vega:
OTTSUSG00000001318
UniProt:
Q29024
B9TSQ2
LinkDB
All DBs
Position
7:complement(23658089..23669095)
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaacgatgtggacaatgagctcttggattatgaagacgatgaggtggagaca
gcagctgggggagatggggctgaggcccctgccaagaaggatgtcaagggctcctatgtc
tccatccacagctctggctttcgtgacttcctgctcaagccagagttgctccgggccatt
gttgactgtggctttgagcatccatcagaagttcagcatgaatgcatccctcaggccatc
ctgggaatggatgtcctatgccaggccaagtcaggcatggggaagacagcggtgtttgtg
ctggctacactgcaacagctggagccagttactgggcaggtgtctgtactggtgatgtgt
cacactcgggagttggcttttcagatcagcaaggagtatgagcgcttctctaaatacatg
cccaatgtcaaggtcgcagtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcatattgtcgtggggacccctggccgcatcctagccctggct
cgaaataagagcctcaacctcaaacacattaaacactttatcttggatgaatgtgacaag
atgcttgaacaactcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccac
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagattcgtccagtctgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcat
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgat
cttctggatgtccttgagttcaaccaggtggtgatatttgtgaagtctgtgcagcgctgc
attgccctggcccagctcctggtggagcagaacttcccagccattgccatccaccgtggg
atgccccaggaggagaggctttctcggtatcagcagtttaaagattttcaacgacgaatt
cttgtggctaccaacctgtttggccgaggcatggacatcgagcgggtgaacattgccttc
aactacgacatgcctgaggattctgacacctacttgcatcgggtggccagagccggccga
tttggcaccaagggcttggccatcacatttgtgtcagatgagaatgatgccaagatcctc
aatgacgtgcaggatcgctttgaagtcaatattagtgagctgcctgacgagatagacatt
tcctcctacattgaacagacgcggtag
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